| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 168354 | 0 (0.000) | 37 (1.530) | 37/470 | 0.0 | 100% | coding (871/2244 nt) | fhuA | ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | = 182568 | 0 (0.000) | coding (106/1158 nt) | cdaR | DNA‑binding transcriptional activator CdaR | |||||
GACTGGTTTTGACTTTAGCGATTCGTTGGATGA‑TGACGGTGTTTACTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAACGGTAAGCGTCTGCCGACAGACTTTAATGAAGGGGCGAAGAACAACACCTATTCTCGTAATGAGAAGATGGTCGGCTACAGCTTCGATCACGAATTTAACGACACCTTTACTGTGCGTCAGAACCTGCGCTTTGCTGAAAACAAAACCTCGCAAAACAGCGTTTATGGTTACGGCGTCTGCTCCGATCCGGCGAATGCTTACAGCAAACAGTGTGCGGCATTAGCGCCAGCGGATA > NC_000913/168107‑168591 | gACTGGTTTTGACTTTAGCGATTCGTTGGATGA‑TGACGGTGTTTACTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCCATGCCCAGCAGACAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGCGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGCGCCGCTGCCGAta > 1:229935‑M1/1‑248 (MQ=255) aCTGGTTTTGACTTTAGCGATTCGTTGGATGA‑TGACGGTGTTTACTCTTATCACCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaat > 1:205077‑M1/1‑247 (MQ=255) ggTTTTGACTTTAGCGATTCGTTGGATGA‑TGACGGTGTTTACTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTTCCGAtaatt < 1:187223‑M1/249‑6 (MQ=255) tttGTCTTTAGCGATTCGTTGGATGAGTG‑CGGGGTTTACTCTTATCGCCGTACCGTTCTTGCGCGTTCTGTCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGTACCGGCGTTCACCTGGCGTCCGGATGATAAAGCCATTTTGTCCTTCCTTTCTTACGGCCGGAACGAGCCGGAAACGGGTTATCACCGCTGGTTGCCGAATGAGCGAACCGATGtgccgatgccgataattcgtc < 2:167507/250‑10 (MQ=255) tttGACTTTAGCGATTCGTTGGATGA‑TGACGGTGTTTACTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTGGCCGAAAGAGGGATCCGTTGAGACGCTGCCGAtaattcgcc < 1:75576‑M1/250‑10 (MQ=255) tGACTTTAGCGATTCGTTGGATGA‑TGACGGTGTTTACTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccac > 1:154092‑M1/1‑239 (MQ=255) tGGATGA‑TGACGGTGTTTACTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgtt < 1:215470‑M1/250‑29 (MQ=255) ctTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGTCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatacattacgttgatattggtatcgatgatgcgc > 2:498‑M1/1‑201 (MQ=255) tGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCGTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgata < 1:148582‑M1/250‑69 (MQ=255) cAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCAACGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattt > 1:94917‑M1/1‑170 (MQ=255) attcccagcAGAAAGGGTCAAAAGAGCAGAGGTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttg < 2:184345‑M1/248‑84 (MQ=255) ggggtCAGAATATCAGCGTTAGGGTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTGCCTTTCTTACCTCCAGAACGAGCCGGAAACCGGTTAGTACGGCTGGTTGCCGAAAGAGGGAACCGTTGCGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatctatgatgcgcatggtacgtgccacgagatcctgcgccattttggtatcaagatgcc < 2:143368‑M1/250‑97 (MQ=255) gggTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgcca < 2:154092‑M1/251‑98 (MQ=255) aagaGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagcc < 1:175683‑M1/251‑105 (MQ=255) gcGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATCACAACAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACAGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattccgttgatattggtatcgatgatgcgcctggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtc > 1:235323‑M1/1‑140 (MQ=255) cGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcc < 1:193611‑M1/251‑113 (MQ=255) aTGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGCGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGCGGGCACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtctcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtctcaagctgccagccagccataagtcctccg > 2:228092‑M1/1‑135 (MQ=255) cACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacg < 1:83446‑M1/251‑126 (MQ=255) aCCGGCGTGCACCTGGCGTCCTGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacgg < 2:48253‑M1/251‑127 (MQ=255) gcgtgtacctggcGTCCGGATGATAAAACCAATTTTCCCTTCCTTACTTACTGCCAGAACGTGCCGGAAACCGGTTATTAAGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattgttatcgatgatgcgcatggtacgtgctacgatatcctgcgccattttgggatcaagatgccagccagccataagtcctccgttatgcacggctta < 2:61857‑M1/245‑131 (MQ=255) gCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaag < 1:224428‑M1/251‑142 (MQ=255) gTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGAAGGAAACCGGTTATTACGGCTGGTTGCCGAAGGAGGGAACCGTTGAGCCGCTGCCGAtaaatcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgcaattttggtatcaatatgccagccagccataagtcccccgttatgcacagcttagcataaggaagt > 2:33175‑M1/1‑108 (MQ=255) ggATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgta < 2:101095‑M1/251‑148 (MQ=255) atgatAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCGGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaac < 1:250700‑M1/251‑150 (MQ=255) atAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcatgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgt > 1:152682‑M1/1‑99 (MQ=255) aaaaCCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacg < 1:22484‑M1/251‑155 (MQ=255) cAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGCAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcatt > 2:122583‑M1/1‑92 (MQ=255) aCCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGCGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaa > 1:104452‑M1/1‑85 (MQ=255) ccttccttTCTTACTTCCAGCACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTAAGCCGCTGCCGAtaattcgcccacgggcatacattacgttgatattggtatcgatgatgcgcctggtacgtgccacgttatcctgcgccattttggtatcaagatgccagccagccctaagtcctccgttatgcacggcttagcataaggaagtaagtaacgcacggcattgggcaaat > 1:177426‑M1/1‑84 (MQ=255) ttccttTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgc > 1:178879‑M1/1‑82 (MQ=255) ccAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatg > 2:79686‑M1/1‑68 (MQ=255) aCGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatg > 2:58875‑M1/1‑63 (MQ=255) cggtccggaaACCGGTTATTTCGGCTGGTTGTCGAAAGAGGGAACCGTTTGGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgggccacgatatcctgcgccattttggtatcaatatgccagccagccataattgctccgttatgcacggcttagcataaggaagtacgtaacgtactgcattgtgcaaatgcgtaaaggtttatgaagatgt < 2:168249‑M1/247‑190 (MQ=255) gAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgt > 2:209869‑M1/1‑61 (MQ=255) aGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgtat < 1:79686‑M1/251‑192 (MQ=255) aCCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgtatggagttgg > 2:218183‑M1/1‑52 (MQ=255) taCGGCTGGCTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggcacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgtatggagttgtggtgaagtt > 1:47002‑M1/1‑43 (MQ=255) tGAGCCGCTGCCGAtaattcgcccacgggcatccattacgttgatattggtatcgatgatgcgcatggtacgtgccacgatatcctgcgccattttggtatcaagatgccagccagccataagtcctccgttatgcacggcttagcataaggaagtacgtaacgtacggcattgtgcaaatgcctaaaggatgatgaagatgtatggagttgtggtgaagttcacagattgtaaggagaaccccttcccgt > 1:215181‑M1/1‑14 (MQ=255) | GACTGGTTTTGACTTTAGCGATTCGTTGGATGA‑TGACGGTGTTTACTCTTATCGCCTGACCGGTCTTGCGCGTTCTGCCAATGCCCAGCAGAAAGGGTCAGAAGAGCAGCGTTATGCTATTGCACCGGCGTTCACCTGGCGTCCGGATGATAAAACCAATTTTACCTTCCTTTCTTACTTCCAGAACGAGCCGGAAACCGGTTATTACGGCTGGTTGCCGAAAGAGGGAACCGTTGAGCCGCTGCCGAACGGTAAGCGTCTGCCGACAGACTTTAATGAAGGGGCGAAGAACAACACCTATTCTCGTAATGAGAAGATGGTCGGCTACAGCTTCGATCACGAATTTAACGACACCTTTACTGTGCGTCAGAACCTGCGCTTTGCTGAAAACAAAACCTCGCAAAACAGCGTTTATGGTTACGGCGTCTGCTCCGATCCGGCGAATGCTTACAGCAAACAGTGTGCGGCATTAGCGCCAGCGGATA > NC_000913/168107‑168591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |