New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	168704 =	0 (0.000)	34 (1.390)	31/476	0.1	100%	coding (1221/2244 nt)	fhuA	ferrichrome outer membrane transporter/phage receptor
	?	NC_000913	182989 =	0 (0.000)					coding (527/1158 nt)	cdaR	DNA‑binding transcriptional activator CdaR

TACTGTGCGTCAGAACCTGCGCTTTGCTGAAAACAAAACCTCGCAAAACAGCGTTTATGGTTACGGCGTCTGCTCCGATCCGGCGAATGCTTACAGCAAACAGTGTGCGGCATTAGCGCCAGCGGATAAAGGCCATTATCTGGCACGTAAATACGTCGTTGATGATGAGAAGCTGCAAAACTTCTCCGTTGATACCCAGTTGCAGAGCAAGTTTGCCACTGGCGATATCGACCACACCCTGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGCGGTCGTTATGACTGGGC  >  NC_000913/168464‑168949                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      cggtaaaatagttgcccagtgaaacgcgaaaacgcagctggccgtactctttcatgcgggtaatcagttgttcaactcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGgtg                                                                                                                                                                                                                                             >  1:217674‑M1/241‑251 (MQ=255)   gtaaaatagttgcccagtgaaacgcgaaaacgcagctggccgtactctttcatgcgggtaatcagttgttcaactcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTc                                                                                                                                                                                                                                           >  1:93039‑M1/239‑251 (MQ=255)                          gcgaaagctcagctggccgtactcttgaatgggggtaatcagttgttcaactcgcttacgatgatcttcttcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgcccccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtcctcgcgaaGCTTACCGGTGTCGTCTTTATGCCTATGCGTAATGa                                                                                                                                                                                                                    >  2:178320‑M1/216‑251 (MQ=255)                          gcgaaaacgcagctggccgtactctttcatgcgggtaatcagttgttcaactcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATg                                                                                                                                                                                                                     <  1:227280‑M1/35‑1 (MQ=255)                          gcgaaaacgcagctggccgtactctttcatgcgggtaatcagttgttcaactcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGa                                                                                                                                                                                                                    >  2:15349‑M1/216‑251 (MQ=255)                                      ctggccgtactctttcatgcgggtaatcagttggtcaactcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCtg                                                                                                                                                                                                        <  1:73828‑M1/48‑1 (MQ=255)                                        ggccgtactctttcatgcgggtaatcagttgttcaacgcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattatgacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCtggt                                                                                                                                                                                                      >  1:193547‑M1/202‑251 (MQ=255)                                             tactctttcatgcgggtaatcagttgttcaactcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCtggtttggt                                                                                                                                                                                                 <  2:132059‑M1/55‑1 (MQ=255)                                                              aatcagttgttcaactcgcttacgattatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctggccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGTTTACGACGGCTCTGTGcc                                                                                                                                                                                >  2:247972‑M1/180‑251 (MQ=255)                                                              aatcagttgttcaactcgcttacgatgatcttctgcatcccagctcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattatgtcgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGcc                                                                                                                                                                                >  2:142754‑M1/180‑251 (MQ=255)                                                                       ttcaactcgcttacgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCa                                                                                                                                                                        <  1:93303‑M1/80‑1 (MQ=255)                                                                                   acgatgatcttctgcatcccagcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATcc                                                                                                                                                           <  1:29746‑M1/93‑1 (MQ=255)                                                                                                  atcccagcgcccaaaagagtgcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagtttttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCATCGCCTGGTTTGGTTACGACGATTCTGTGCCACTGCTCAATCTGCACAATCCGGTGATTACCGAttt                                                                                                                                            >  2:52427‑M1/144‑251 (MQ=255)                                                                                                        gcgcccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACtt                                                                                                                                      >  1:88517‑M1/138‑251 (MQ=255)                                                                                                         cgcccaaaagagttcaacgccgctttcaaccccaccatttcggttcgcgagacaatcgcccccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtacctccgccattgcgctgtccactccaaGCTGACCGGTTTCGTCTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGCCTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTc                                                                                                                                     >  1:1224‑M1/137‑251 (MQ=255)                                                                                                           cccaaaagagttcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCaa                                                                                                                                   >  1:245451‑M1/135‑251 (MQ=255)                                                                                                                      tcaacgccggtttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgcccttgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCaa                                                                                                                             <  1:136952‑M1/123‑1 (MQ=255)                                                                                                                                tttcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTc                                                                                                              <  1:225032‑M1/138‑1 (MQ=255)                                                                                                                                  tcaacaccaccatttcggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCg                                                                                                            <  1:229778‑M1/140‑1 (MQ=255)                                                                                                                                                 cggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCAtt                                                                                              >  1:137454‑M1/97‑250 (MQ=255)                                                                                                                                                 cggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTc                                                                                             >  1:132059‑M1/97‑251 (MQ=255)                                                                                                                                                  ggttagcgagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCt                                                                                            >  1:88552‑M1/96‑251 (MQ=255)                                                                                                                                                         gagacaatcgccaccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATaaa                                                                                     >  1:65531‑M1/89‑251 (MQ=255)                                                                                                                                                                    caccagattattacgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCACTGCCACAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGaaacaaac                                                                          <  2:66717‑M1/174‑1 (MQ=255)                                                                                                                                                                                acgctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGt                                                              >  2:96302‑M1/66‑251 (MQ=255)                                                                                                                                                                                  gctcgggcgtagtcagcgcgttttgcagttgttgtaactccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTc                                                            >  1:5662‑M1/64‑251 (MQ=255)                                                                                                                                                                                                agcgcgttttgcagtggttgtaacgccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACGTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCTCTGCTCAATCTGTACAATCCGGTGAATAc                                                                                                                                                  >  2:36898‑M1/50‑151 (MQ=255)                                                                                                                                                                                                         tgcagttgttgtaactccgacattgcgctgtccacgcccaGCTGACCGGTGTCGACTTTCTGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTAAATCTGAACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTACGGCCCTTACAGCATTCTGAATAACCAGAAACACACGGTCGTTTATGTTCAGGATCAGGCGCATTTGGATaa                                      <  2:146193‑M1/210‑1 (MQ=255)                                                                                                                                                                                                                     aacgccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTAGGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTggtcccc                         >  2:136952‑M1/29‑248 (MQ=255)                                                                                                                                                                                                                         ccgccattgcgctgtccacgccaaGCTGACCGGTGTCGACGTTATGCGTATGCGTAATGACATCATCGCCTGGTTTGGTTACGACGACTCTGTGCCTCTGCGCAATCTGTACAATCCGGTGAATACCGATTTCGAAGACAATGCCAAAGATCCGGCAAACCCCCGCCCTTACCGCACTCTGAATAAACAGAAACAAACGGGCGGTTATGTTCAGGACCAGGCGCAGTGGGATAAAGTGCTGGTCACCCt                       >  1:133265‑M1/25‑249 (MQ=255)                                                                                                                                                                                                                           gccattgcgctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGc                   <  1:61625‑M1/229‑1 (MQ=255)                                                                                                                                                                                                                                    ctgtccacgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGCAGCCTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGCCTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGCGGTCGTTAt          <  1:16783‑M1/238‑1 (MQ=255)                                                                                                                                                                                                                                          acgccaaGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGCGGTCGTTATGACTgg    <  2:56222‑M1/244‑1 (MQ=255)                                                                                                                                                                                                                                                aGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGCGGTCGTTATGACTGGGc  <  1:86601‑M1/246‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      TACTGTGCGTCAGAACCTGCGCTTTGCTGAAAACAAAACCTCGCAAAACAGCGTTTATGGTTACGGCGTCTGCTCCGATCCGGCGAATGCTTACAGCAAACAGTGTGCGGCATTAGCGCCAGCGGATAAAGGCCATTATCTGGCACGTAAATACGTCGTTGATGATGAGAAGCTGCAAAACTTCTCCGTTGATACCCAGTTGCAGAGCAAGTTTGCCACTGGCGATATCGACCACACCCTGCTGACCGGTGTCGACTTTATGCGTATGCGTAATGACATCAACGCCTGGTTTGGTTACGACGACTCTGTGCCACTGCTCAATCTGTACAATCCGGTGAATACCGATTTCGACTTCAATGCCAAAGATCCGGCAAACTCCGGCCCTTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGCGGTCGTTATGACTGGGC  >  NC_000913/168464‑168949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.