Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,682,261	Δ34 bp	coding (1154‑1187/1287 nt)	dctA ←	C4 dicarboxylate/orotate:H(+) symporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3682261	3682294	34	70 [0]	[1] 71	dctA	C4 dicarboxylate/orotate:H(+) symporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3682260	0 (0.000)	70 (1.010)	61/486	0.2	100%	coding (1188/1287 nt)	dctA	C4 dicarboxylate/orotate:H(+) symporter
	?	NC_000913	3682295 =	0 (0.000)					coding (1153/1287 nt)	dctA	C4 dicarboxylate/orotate:H(+) symporter

ACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCGA  >  NC_000913/3682035‑3682501                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  aCATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcg                                                                                                                                                                                                                          >  2:322935‑M1/1‑226 (MQ=255)       aaaTGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgat                                                                                                                                                                                                                    >  1:305461‑M1/1‑220 (MQ=255)       aaaTGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGAGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGCCAgcgcacgagcttctgacataacgcggtcgat                                                                                                                                                                                                                    >  2:386950‑M1/1‑220 (MQ=255)         aTGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCCCTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGAAAATTCGTGCGTTTTGACATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTAACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgatac                                                                                                                                                                                                                  >  1:349900‑M1/1‑218 (MQ=255)           gTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccg                                                                                                                                                                                                                >  1:121748‑M1/1‑216 (MQ=255)               cGGAAGAAGTGAAATAAACCTGAACTCACACAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgatcccgaggg                                                                                                                                                                                                            >  2:486777‑M1/1‑212 (MQ=255)                    gaagTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAATGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTGTTTTTTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgctcgagcttctgacataaagcggtcgataccgaggatcaga                                                                                                                                                                                                       <  2:528477‑M1/251‑45 (MQ=255)                        tGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgcc                                                                                                                                                                                                    >  2:495273‑M1/1‑203 (MQ=255)                        tGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGAGTCAATTATGCGCAAACACCCGCACTAGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGCGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGGGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgcggatcagcgcc                                                                                                                                                                                                    >  2:90391‑M1/1‑203 (MQ=255)                         gAAATAAGCCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGAAAACACCCGCACGCGGGGAAGGTAGGGCGGGCATAAGTGATGAGATTAAGAGGATAATGCGGGCTTTTTGCCATCCGGGGCGCGATTATTCAGCACCGCGTCCAGTGTCTTGTGGTCCAGTTCTGTCACCCACTTAGCAACGACAgtgcacgagcttctgacataaagcggtcgataccgaggatcagcgccag                                                                                                                                                                                                  <  1:405045‑M1/251‑50 (MQ=255)                         gAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgcc                                                                                                                                                                                                    >  1:337527‑M1/1‑202 (MQ=255)                          aaaTAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCAGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgcgcttctgacataaagcagtcgataccgaggatcagcgcc                                                                                                                                                                                                    >  2:513893‑M1/1‑201 (MQ=255)                             tAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagaccc                                                                                                                                                                                              >  1:643480‑M1/1‑198 (MQ=255)                               aaCCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgc                                                                                                                                                                                            >  1:208842‑M1/1‑196 (MQ=255)                                  cTGAACTCACCCAGGTGGTAAGTTCAGGCACCGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacc                                                                                                                                                                                               >  2:454772‑M1/1‑193 (MQ=255)                                  cTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctac                                                                                                                                                                                         >  1:505251‑M1/1‑193 (MQ=255)                                  cTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacc                                                                                                                                                                                               <  1:454772‑M1/245‑53 (MQ=255)                                    gAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccg                                                                                                                                                                                       <  1:56577‑M1/251‑61 (MQ=255)                                      aCTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggc                                                                                                                                                                                     <  1:341240‑M1/251‑63 (MQ=255)                                               ggtggtAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgagcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggccc                                                                                                                                                                            >  1:296125‑M1/1‑180 (MQ=255)                                                  ggtAAGTTCAGGCACAGGGGTCAATTATGCGCAAACCCCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccac                                                                                                                                                                          <  1:292784‑M1/250‑74 (MQ=255)                                                  ggtAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccacc                                                                                                                                                                         <  1:579745‑M1/251‑75 (MQ=255)                                                           aGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagc                                                                                                                                                                <  2:121748‑M1/251‑84 (MQ=255)                                                                  ggggTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccg                                                                                                                                                         >  1:183296‑M1/1‑161 (MQ=255)                                                                       cAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaagggcccaccgcagagagcgtcgccgccagc                                                                                                                                                    <  2:337527‑M1/251‑96 (MQ=255)                                                                        aaTTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcc                                                                                                                                                   >  1:138671‑M1/1‑155 (MQ=255)                                                                        aaTTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagc                                                                                                                                                    >  2:369245‑M1/1‑155 (MQ=255)                                                                        aaTTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagc                                                                                                                                                    >  1:20009‑M1/1‑155 (MQ=255)                                                                             tGCGCAAACACCCGCACTAGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgat                                                                                                                                               >  1:616679‑M1/1‑150 (MQ=255)                                                                                  aaaCACCCGCACTCGGGGGAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTCGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgccgagagcgtcgccgcccgcacgatcaagcc                                                                                                                                         >  2:356311‑M1/1‑145 (MQ=255)                                                                                      ccccgCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccacta                                                                                                                                     <  1:369245‑M1/250‑111 (MQ=255)                                                                                               cGGGGCAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacc                                                                                                                            >  2:421635‑M1/1‑132 (MQ=255)                                                                                               cGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgtta                                                                                                                              <  1:102863‑M1/249‑118 (MQ=255)                                                                                                ggggAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttaccc                                                                                                                           <  1:698431‑M1/251‑121 (MQ=255)                                                                                                 gggAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccc                                                                                                                          >  2:98904‑M1/1‑130 (MQ=255)                                                                                                      gggAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccg                                                                                                                     >  1:629690‑M1/1‑125 (MQ=255)                                                                                                          gTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCTTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTCCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgccataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccc                                                                                                                 <  2:541222‑M1/251‑131 (MQ=255)                                                                                                          gTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccc                                                                                                                 >  1:548577‑M1/1‑121 (MQ=255)                                                                                                                gCATAAGAGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCCTCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCAAGTTCTTTAACCCACTTAGCAACGACAgcgcccgagcttctgacatacagcggtcgataccgtggatcagcgccagacccgctcccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgccccttt                                                                                                              >  2:272831‑M1/1‑115 (MQ=255)                                                                                                                  aTAAGTGATGAGATTAAGAGGATAATTCGTTCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcgggcgataccgaggagcagcgccagaccctctaccggcaaatggcccgccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaag                                                                                                         <  2:77542‑M1/251‑139 (MQ=255)                                                                                                                             gaTTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaac                                                                                              <  1:252050‑M1/251‑150 (MQ=255)                                                                                                                                    agGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgatta                                                                                       <  1:298253‑M1/251‑157 (MQ=255)                                                                                                                                                    tttGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagcagaaagcagcaacacgattaacagcgtgatttggtg                                                                       >  2:222570‑M1/1‑79 (MQ=255)                                                                                                                                                        ccATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgatcaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacg                                                                   >  1:247788‑M1/1‑75 (MQ=255)                                                                                                                                                         cATCCGGCGCACGATTATTAAGCACATCTTCCAGTTTTTTGTGGTCCAGCTCTTTCACCCACTTAGCAACGCCAgcgcccgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccaacccgataaagccactacccgttacccctgccgcccctttcgaagaaagcagcaacacgattaacagcgtgatttggtggacgc                                                                  >  2:112993‑M1/1‑74 (MQ=255)                                                                                                                                                          aTCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgat                                                                 <  1:660154‑M1/251‑179 (MQ=255)                                                                                                                                                                   aCGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCAAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctg                                                        >  2:340135‑M1/1‑64 (MQ=255)                                                                                                                                                                       ttattCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactg                                                    >  1:173608‑M1/1‑60 (MQ=255)                                                                                                                                                                        tattCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgt                                                   >  1:424143‑M1/1‑59 (MQ=255)                                                                                                                                                                         attcagaccatcgtccagTTTTTTGGGGTCCAGTTCTTTCACCCACTTAGCAAAGACAgcgcacgagcttctgacataaagcggtcgataccgaggagcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcatcacgattatcagcgtgatttggtggacgatatccatctgactgt                                                   <  2:618997‑M1/242‑193 (MQ=255)                                                                                                                                                                                acaTCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGCCAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagacagcagcaacacgattaacagcgtgatttggtggacgctatccatctgactgttagtggcc                                           >  1:450602‑M1/1‑51 (MQ=255)                                                                                                                                                                                 caTCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcct                                          <  1:421635‑M1/251‑202 (MQ=255)                                                                                                                                                                                     gTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggg                                      >  2:177615‑M1/1‑46 (MQ=255)                                                                                                                                                                                       ccAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcg                                     >  1:131902‑M1/1‑44 (MQ=255)                                                                                                                                                                                          gTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgata                                  >  2:51742‑M1/1‑41 (MQ=255)                                                                                                                                                                                           ttttttGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgctaccgaggatcagcgccagacccgctaccggcaaatggccccccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggatgatatccatctgactgttagtggcctgggcgataa                                 >  2:244043‑M1/1‑40 (MQ=255)                                                                                                                                                                                            tttttGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcatagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaa                                <  1:555603‑M1/250‑212 (MQ=255)                                                                                                                                                                                            tttttGTGGACCAGTTCTTTCACCCACTTAGAAACGACAgcgctcgagcttctgacataaagcggtcgataccgtggatcagcgccagacccgctaccggcaaatggcccaccgcagggcgcgtcgccgccagcacgataaagacactacccgttacccctgacgcacctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatctccatctgactgttagtggccagggcgataacc                               >  2:629058‑M1/1‑39 (MQ=255)                                                                                                                                                                                                   ggTCCAGTTCTGTCACCCACTTAGCAACGCCAgcgcacgagcgtctaaaaaaaagcggtcgataccgaggatcagcgcaagacccgctaccggcaaatggcccaccgcagagagcgccgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactggtattggcttgggggataaacaccgccg                        <  2:616679‑M1/251‑220 (MQ=255)                                                                                                                                                                                                        aGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgcctgttagtggcctgggcgataaacaccgccgccatt                   >  2:172676‑M1/1‑27 (MQ=255)                                                                                                                                                                                                             tttCACCCACTTAGCACCGACAgcgcacgaacttctgacataaagcggccgataccgaggatcagcgccagacccgctaccggaaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtc                >  2:444590‑M1/1‑22 (MQ=255)                                                                                                                                                                                                             tttCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgcaattgtc                >  1:486940‑M1/1‑22 (MQ=255)                                                                                                                                                                                                                cACCCACTTAGCAACGCCAgcgcacgagattctgacctacagcggtcgataccgaggctcagcgccagaccagctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgatacagccactacccgttacccctgccgcccctttagaagcaagcagcaacacgcttaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtcaggt            >  2:353576‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                cACCCACTTAGCAACGACAgcgcccgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtcaggta           <  1:193434‑M1/251‑233 (MQ=255)                                                                                                                                                                                                                    cACTTAGCAACGACAgcgaacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgcccgcacgataaagccactacccgttacccctgccgcacctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgacagttagtggcctgggcgataaacaccgacgccattgtcagggatatc       >  2:480985‑M1/1‑15 (MQ=255)                                                                                                                                                                                                                        tAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggatgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtcaggtatatcgat    <  1:244043‑M1/250‑240 (MQ=255)                                                                                                                                                                                                                        tAGCAACGACAgcgcacgagcttctgacataaagcggtcgataacgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtcaggtatatcgatg   >  1:551503‑M1/1‑11 (MQ=255)                                                                                                                                                                                                                         agccacgacAgcgcgcgatcttctgacataaagcggtctataccgaggttcagcgccagacccgctaccggcaaatggccccccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggccggggcgataaacaccgccgccattgtcaggtatagcgatgt  <  1:386950‑M1/247‑242 (MQ=255)                                                                                                                                                                                                                         aGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttagtggcctgggcgataaacaccgccgccattgtcaggtatatcgatgt  <  2:20009‑M1/251‑242 (MQ=255)                                                                                                                                                                                                                         aGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgttaggggcctgggcgataaacaccgccgccattgtcaggtatatcgatgt  <  1:42748‑M1/251‑242 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  ACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAACAGCGTGATTTGGTGGACGATATCCATCTGACTGTTAGTGGCCTGGGCGA  >  NC_000913/3682035‑3682501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑