Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,406,612	IS2 (–) +5 bp	coding (26‑30/939 nt)	lrhA ←	DNA‑binding transcriptional dual regulator LrhA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2068941 =	NA (NA)	34 (0.760)	30/480	0.4	100%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	= 2406616	0 (0.000)					coding (26/939 nt)	lrhA	DNA‑binding transcriptional dual regulator LrhA
*	?	NC_000913	2406612 =	0 (0.000)	31 (0.690)	31/482	0.4	100%	coding (30/939 nt)	lrhA	DNA‑binding transcriptional dual regulator LrhA
	?	NC_000913	= 2997691	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

AATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACT  >  NC_000913/2406367‑2406865                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                          aaTGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGATGTCGATGTTaa                                                                                                                                                                                                                                                           <  2:452396/250‑1 (MQ=255)            agaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGAt                                                                                                                                                                                                                                               >  1:453861‑M1/235‑251 (MQ=255)                ataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGc                                                                                                                                                                                                                                           <  1:64169‑M1/21‑1 (MQ=255)                 catcatTAAAACGCAGGATTGTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAGCGAGGTCGAGGTTAAtggatttgcccctat                                                                                                                                                                                                                                            >  2:397913‑M2/1‑234 (MQ=255)                  aactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatctgttcctgggtggtacgccgtctgcgtttcgccggcccgaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGAGTTGCa                                                                                                                                                                                                                                          >  2:453112‑M1/229‑250 (MQ=255)                   actggctgtctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtccgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACt                                                                                                                                                                                                                                        >  1:317085‑M1/228‑251 (MQ=255)                    ctggccggccgctacaccatgatgccgggcaacgaggaagaccgtcatcccaggttcaacgctctgatgcacaattgcgatcttttcctgagtgttacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtcttaagactatcacttctttaagagatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTtgcaatt                                                                                                                                                                                                                                       <  2:309971‑M1/25‑4 (MQ=255)                      ggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagcttcagggggccagtctaGTTAATTATCGGACGATTTGCACTTAt                                                                                                                                                                                                                                     <  2:120337‑M1/27‑1 (MQ=255)                         aaaCGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGAGTTAAGATCGGCAACAACAACAAATGTTCTCAGCCGATAGAGGTCGAGGTTAAtgtatttgcccctctatttccagac                                                                                                                                                                                                                                  <  2:359471‑M2/251‑26 (MQ=255)                           aCGCAGGATTTTCCTGGCGTAACCAAGAAGTTGTATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGACACAGCAACAAATGTTCTCAGCAGATCGAGGGCGCGGTTAAtggctttgcccctttatttccagacat                                                                                                                                                                                                                                <  1:21164‑M2/251‑28 (MQ=255)                             gCAGGAGTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatct                                                                                                                                                                                                                              >  1:81402‑M2/1‑222 (MQ=255)                                 acaccatgttgccgggcaacgagggagaccgtcatccccggttcaaaactctgatgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaacactagtattaagactatgacttatttaagtgatattggttgtctggagattcaggaggccagtctaGTTAATTATCGGTCGATTTGCACTTATCATATATTATc                                                                                                                                                                                                                          <  2:314‑M1/38‑1 (MQ=255)                                  caccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCa                                                                                                                                                                                                                         >  1:85257‑M1/213‑251 (MQ=255)                                             gTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCCAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaaccc                                                                                                                                                                                                               <  1:181322‑M2/250‑45 (MQ=255)                                              gggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcggc                                                                                                                                                                                                             >  2:355628‑M1/201‑251 (MQ=255)                                                     gagggagaccgtaatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACt                                                                                                                                                                                                      <  1:352991‑M1/58‑1 (MQ=255)                                                               gtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTa                                                                                                                                                                                            >  2:384153‑M1/184‑251 (MQ=255)                                                                  aTGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGCCTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacagctgttatcacttatcccattacaagcccgctgccgcaga                                                                                                                                                                                         >  2:155470‑M2/1‑185 (MQ=255)                                                                       cggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatcttggttgtctggcgattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGCGCTGGTTAATGCtgtg                                                                                                                                                                                    <  2:364876‑M1/76‑1 (MQ=255)                                                                         gttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGca                                                                                                                                                                                  >  2:4110‑M1/174‑251 (MQ=255)                                                                            caaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGCGCTGGTTAATGc                                                                                                                                                                                        <  2:225881‑M1/72‑1 (MQ=255)                                                                            caaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGc                                                                                                                                                                                        >  1:225881‑M1/171‑242 (MQ=255)                                                                                      ctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactcgtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATAACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGc                                                                                                                                                                     <  2:456948‑M1/91‑1 (MQ=255)                                                                                       gCGACCGTGACGAGCGAACAGTTCGTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGTGTAAtggatttgcccctatatttccagacatctgttatcacttaagccatttcaagcccgctgccgcagatattcccgtggggatcgataa                                                                                                                                                                    >  2:190364‑M2/1‑164 (MQ=255)                                                                                         gtccgtGACGCGCGAACAGTTCTTTCACAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGGTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttcccgaaatctgttatcacttaacccattacaagcccgctgccgcagatatttccgtggcgagcgctcacc                                                                                                                                                                  <  2:322800‑M2/249‑90 (MQ=255)                                                                                                gcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCAttt                                                                                                                                                           >  2:280142‑M1/151‑251 (MQ=255)                                                                                                             gtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTc                                                                                                                                               >  1:117188‑M1/138‑250 (MQ=255)                                                                                                                ttCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccat                                                                                                                                            >  1:243359‑M2/1‑139 (MQ=255)                                                                                                                tggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaacaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg                                                                                                                                                                                                                  <  1:189556‑M1/46‑1 (MQ=255)                                                                                                                tggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTAGCTCTTACTg                                                                                                                                                                                                                  >  2:189556‑M1/135‑180 (MQ=255)                                                                                                                     aaCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta                                                                                                                                      >  1:105866‑M2/1‑134 (MQ=255)                                                                                                                             gcgtttctccggccctaagacatcaatcatctgttcgccaatgactagtctaaaaactagtattaagactatcgcttatttaagtgatattggtggtctggagattcagggggccagtctaGGTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGGGCACACGCAAACAAGCAATTCCATTTGTATTGTGCCTCCCTGGCAGTTTCATCCg                                                                                                                              >  2:465858‑M1/122‑251 (MQ=255)                                                                                                                                    aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGCGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcc                                                                                                                       <  1:205254‑M2/251‑133 (MQ=255)                                                                                                                                      cggccctgagacatcaatcatctgttctccactgactagtctaaaaactagtattaagactatcacttatttaagcgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCgg                                                                                                                      <  1:412210‑M1/138‑1 (MQ=255)                                                                                                                                          cATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccggggcgagcgataacccagcgcactatgcggatgccattcgttctaatgctcgcacgcctctgc                                                                                                                  <  2:100726‑M2/250‑138 (MQ=255)                                                                                                                                           aTTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                                 <  1:368125‑M2/250‑139 (MQ=255)                                                                                                                                           aTTTGCTGACTTACGGCGGACTGAATACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                                 <  1:236991‑M2/250‑139 (MQ=255)                                                                                                                                            tttGCTGACTTACGGCGGACTGAGTACGCCACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggctttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagagataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                                 <  1:327656‑M2/249‑139 (MQ=255)                                                                                                                                              tGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggg                                                                                                             <  1:110569‑M2/251‑143 (MQ=255)                                                                                                                                                  gACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacagctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttc                                                                                                           >  1:80575‑M2/1‑105 (MQ=255)                                                                                                                                                       aCGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctg                                                                                                    <  1:34283‑M2/251‑152 (MQ=255)                                                                                                                                                       aCGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatc                                                                                                                                                                                                                        <  2:258784‑M2/135‑36 (MQ=255)                                                                                                                                                       aCGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatc                                                                                                                                                                                                                        >  1:258784‑M2/1‑100 (MQ=255)                                                                                                                                                                       gACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctgg                                                                                    <  2:213283‑M2/251‑168 (MQ=255)                                                                                                                                                                          acacaGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggttt                                                                                 <  1:122088‑M2/251‑171 (MQ=255)                                                                                                                                                                                 ggCAGCTGCGGCAGCCAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagccatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcccttcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatg                                                                          <  2:454790‑M2/251‑178 (MQ=255)                                                                                                                                                                                 ggCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatg                                                                          >  1:213283‑M2/1‑74 (MQ=255)                                                                                                                                                                                    actagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACAt                                                                       >  2:64169‑M1/67‑251 (MQ=255)                                                                                                                                                                                          agcagcaaAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatg                                                                 <  2:318707‑M2/250‑187 (MQ=255)                                                                                                                                                                                             aagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATCTTATCACTTACTGGCGGCTCATAATGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGATGCACTAAAAAAGAGACTCACATTGTTCCGtt                                                              <  2:444789‑M1/194‑1 (MQ=255)                                                                                                                                                                                              gcaAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagt                                                             >  1:77755‑M2/1‑61 (MQ=255)                                                                                                                                                                                                       gtcAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgccccgatattgccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgcttta                                                    >  2:285311‑M2/2‑52 (MQ=255)                                                                                                                                                                                                          aGATCGTCAACATCAACAAAGGTGCTCAGCAGATCGAGGTCGAGGTTAAtggatttgccccgataggtccagacatctgttatcacttagcccagtacaagcccgctgccgcagatacgcccgtggcgagcgataacccagcgcgctatgcggatgccattcgttagaatgctcgaacgcctctgcaaggttctgtgctgccgttaacccgttttgtttggtcatgatactgatgtagtcacgctttatcg                                                 >  2:440319‑M2/1‑49 (MQ=255)                                                                                                                                                                                                                      ttggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGa                                      <  1:334734‑M1/218‑1 (MQ=255)                                                                                                                                                                                                                         acaaATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgccctatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctct                                  <  2:163604‑M2/251‑218 (MQ=255)                                                                                                                                                                                                                            gtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatatat                                >  1:74823‑M1/27‑250 (MQ=255)                                                                                                                                                                                                                                     agcagATCGAGGTCGAGGTTAAttgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgt                      >  1:402207‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                        agggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc                   <  2:187909‑M1/237‑1 (MQ=255)                                                                                                                                                                                                                                         gATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgaggtagtcacgctttatcgttttcacgaagctctctgctattccgttact                  >  1:163604‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                                          aTCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactc                 >  2:110569‑M2/1‑17 (MQ=255)                                                                                                                                                                                                                                            ggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCCATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCatat               <  2:124834‑M1/241‑1 (MQ=255)                                                                                                                                                                                                                                             gccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATc              >  2:371363‑M1/10‑251 (MQ=255)                                                                                                                                                                                                                                              ccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTGCCGTTATAATGCCGGAAGTAGATCACAGAATATATCTACAGGGATCGCATATCt             >  2:412210‑M1/9‑251 (MQ=255)                                                                                                                                                                                                                                                    aggtTAAtggatttgcccctatatttcaaaacatctgttatcacttaacacattacaagcccgctgccgcagatcttcccgtcgcgagcgatcacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcctgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattcagttactctccggactcc       <  2:432226‑M2/251‑245 (MQ=255)                                                                                                                                                                                                                                                         aatggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcacc  >  2:122088‑M2/1‑2 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                          AATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACT  >  NC_000913/2406367‑2406865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.