Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,406,612	IS2 (–) +5 bp	coding (26‑30/939 nt)	lrhA ←	DNA‑binding transcriptional dual regulator LrhA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2068941 =	NA (NA)	34 (0.760)	30/480	0.4	100%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	= 2406616	0 (0.000)					coding (26/939 nt)	lrhA	DNA‑binding transcriptional dual regulator LrhA
*	?	NC_000913	2406612 =	0 (0.000)	31 (0.690)	31/482	0.4	100%	coding (30/939 nt)	lrhA	DNA‑binding transcriptional dual regulator LrhA
	?	NC_000913	= 2997691	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

TAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAG  >  NC_000913/2406366‑2406860                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                         tgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTa                                                                                                                                                                                                                                                       <  1:280142‑M1/4‑1 (MQ=255)  aaTGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGATGTCGATGTTaa                                                                                                                                                                                                                                                      <  2:452396/250‑1 (MQ=255)             agaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGAt                                                                                                                                                                                                                                          >  1:453861‑M1/235‑251 (MQ=255)                 ataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGc                                                                                                                                                                                                                                      <  1:64169‑M1/21‑1 (MQ=255)                  catcatTAAAACGCAGGATTGTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAGCGAGGTCGAGGTTAAtggatttgcccctat                                                                                                                                                                                                                                       >  2:397913‑M2/1‑234 (MQ=255)                   aactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatctgttcctgggtggtacgccgtctgcgtttcgccggcccgaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGAGTTGCa                                                                                                                                                                                                                                     >  2:453112‑M1/229‑250 (MQ=255)                    actggctgtctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtccgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACt                                                                                                                                                                                                                                   >  1:317085‑M1/228‑251 (MQ=255)                     ctggccggccgctacaccatgatgccgggcaacgaggaagaccgtcatcccaggttcaacgctctgatgcacaattgcgatcttttcctgagtgttacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtcttaagactatcacttctttaagagatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTtgcaatt                                                                                                                                                                                                                                  <  2:309971‑M1/25‑4 (MQ=255)                       ggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagcttcagggggccagtctaGTTAATTATCGGACGATTTGCACTTAt                                                                                                                                                                                                                                <  2:120337‑M1/27‑1 (MQ=255)                          aaaCGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGAGTTAAGATCGGCAACAACAACAAATGTTCTCAGCCGATAGAGGTCGAGGTTAAtgtatttgcccctctatttccagac                                                                                                                                                                                                                             <  2:359471‑M2/251‑26 (MQ=255)                            aCGCAGGATTTTCCTGGCGTAACCAAGAAGTTGTATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGACACAGCAACAAATGTTCTCAGCAGATCGAGGGCGCGGTTAAtggctttgcccctttatttccagacat                                                                                                                                                                                                                           <  1:21164‑M2/251‑28 (MQ=255)                              gCAGGAGTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatct                                                                                                                                                                                                                         >  1:81402‑M2/1‑222 (MQ=255)                                  acaccatgttgccgggcaacgagggagaccgtcatccccggttcaaaactctgatgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaacactagtattaagactatgacttatttaagtgatattggttgtctggagattcaggaggccagtctaGTTAATTATCGGTCGATTTGCACTTATCATATATTATc                                                                                                                                                                                                                     <  2:314‑M1/38‑1 (MQ=255)                                   caccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCa                                                                                                                                                                                                                    >  1:85257‑M1/213‑251 (MQ=255)                                              gTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCCAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaaccc                                                                                                                                                                                                          <  1:181322‑M2/250‑45 (MQ=255)                                               gggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcggc                                                                                                                                                                                                        >  2:355628‑M1/201‑251 (MQ=255)                                                      gagggagaccgtaatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACt                                                                                                                                                                                                 <  1:352991‑M1/58‑1 (MQ=255)                                                                gtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTa                                                                                                                                                                                       >  2:384153‑M1/184‑251 (MQ=255)                                                                   aTGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGCCTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacagctgttatcacttatcccattacaagcccgctgccgcaga                                                                                                                                                                                    >  2:155470‑M2/1‑185 (MQ=255)                                                                        cggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatcttggttgtctggcgattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGCGCTGGTTAATGCtgtg                                                                                                                                                                               <  2:364876‑M1/76‑1 (MQ=255)                                                                          gttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGca                                                                                                                                                                             >  2:4110‑M1/174‑251 (MQ=255)                                                                             caaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGCGCTGGTTAATGc                                                                                                                                                                                   <  2:225881‑M1/72‑1 (MQ=255)                                                                             caaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGc                                                                                                                                                                                   >  1:225881‑M1/171‑242 (MQ=255)                                                                                       ctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactcgtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATAACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGc                                                                                                                                                                <  2:456948‑M1/91‑1 (MQ=255)                                                                                        gCGACCGTGACGAGCGAACAGTTCGTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGTGTAAtggatttgcccctatatttccagacatctgttatcacttaagccatttcaagcccgctgccgcagatattcccgtggggatcgataa                                                                                                                                                               >  2:190364‑M2/1‑164 (MQ=255)                                                                                          gtccgtGACGCGCGAACAGTTCTTTCACAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGGTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttcccgaaatctgttatcacttaacccattacaagcccgctgccgcagatatttccgtggcgagcgctcacc                                                                                                                                                             <  2:322800‑M2/249‑90 (MQ=255)                                                                                                 gcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCAttt                                                                                                                                                      >  2:280142‑M1/151‑251 (MQ=255)                                                                                                              gtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTc                                                                                                                                          >  1:117188‑M1/138‑250 (MQ=255)                                                                                                                 ttCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccat                                                                                                                                       >  1:243359‑M2/1‑139 (MQ=255)                                                                                                                 tggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaacaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg                                                                                                                                                                                                             <  1:189556‑M1/46‑1 (MQ=255)                                                                                                                 tggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTAGCTCTTACTg                                                                                                                                                                                                             >  2:189556‑M1/135‑180 (MQ=255)                                                                                                                      aaCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta                                                                                                                                 >  1:105866‑M2/1‑134 (MQ=255)                                                                                                                              gcgtttctccggccctaagacatcaatcatctgttcgccaatgactagtctaaaaactagtattaagactatcgcttatttaagtgatattggtggtctggagattcagggggccagtctaGGTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGGGCACACGCAAACAAGCAATTCCATTTGTATTGTGCCTCCCTGGCAGTTTCATCCg                                                                                                                         >  2:465858‑M1/122‑251 (MQ=255)                                                                                                                                     aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGCGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcc                                                                                                                  <  1:205254‑M2/251‑133 (MQ=255)                                                                                                                                       cggccctgagacatcaatcatctgttctccactgactagtctaaaaactagtattaagactatcacttatttaagcgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCgg                                                                                                                 <  1:412210‑M1/138‑1 (MQ=255)                                                                                                                                           cATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccggggcgagcgataacccagcgcactatgcggatgccattcgttctaatgctcgcacgcctctgc                                                                                                             <  2:100726‑M2/250‑138 (MQ=255)                                                                                                                                            aTTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                            <  1:368125‑M2/250‑139 (MQ=255)                                                                                                                                            aTTTGCTGACTTACGGCGGACTGAATACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                            <  1:236991‑M2/250‑139 (MQ=255)                                                                                                                                             tttGCTGACTTACGGCGGACTGAGTACGCCACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggctttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagagataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                            <  1:327656‑M2/249‑139 (MQ=255)                                                                                                                                               tGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggg                                                                                                        <  1:110569‑M2/251‑143 (MQ=255)                                                                                                                                                   gACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacagctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttc                                                                                                      >  1:80575‑M2/1‑105 (MQ=255)                                                                                                                                                        aCGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctg                                                                                               <  1:34283‑M2/251‑152 (MQ=255)                                                                                                                                                        aCGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatc                                                                                                                                                                                                                   <  2:258784‑M2/135‑36 (MQ=255)                                                                                                                                                        aCGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatc                                                                                                                                                                                                                   >  1:258784‑M2/1‑100 (MQ=255)                                                                                                                                                                        gACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctgg                                                                               <  2:213283‑M2/251‑168 (MQ=255)                                                                                                                                                                           acacaGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggttt                                                                            <  1:122088‑M2/251‑171 (MQ=255)                                                                                                                                                                                  ggCAGCTGCGGCAGCCAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagccatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcccttcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatg                                                                     <  2:454790‑M2/251‑178 (MQ=255)                                                                                                                                                                                  ggCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatg                                                                     >  1:213283‑M2/1‑74 (MQ=255)                                                                                                                                                                                     actagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACAt                                                                  >  2:64169‑M1/67‑251 (MQ=255)                                                                                                                                                                                           agcagcaaAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatg                                                            <  2:318707‑M2/250‑187 (MQ=255)                                                                                                                                                                                              aagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATCTTATCACTTACTGGCGGCTCATAATGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGATGCACTAAAAAAGAGACTCACATTGTTCCGtt                                                         <  2:444789‑M1/194‑1 (MQ=255)                                                                                                                                                                                               gcaAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagt                                                        >  1:77755‑M2/1‑61 (MQ=255)                                                                                                                                                                                                        gtcAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgccccgatattgccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgcttta                                               >  2:285311‑M2/2‑52 (MQ=255)                                                                                                                                                                                                           aGATCGTCAACATCAACAAAGGTGCTCAGCAGATCGAGGTCGAGGTTAAtggatttgccccgataggtccagacatctgttatcacttagcccagtacaagcccgctgccgcagatacgcccgtggcgagcgataacccagcgcgctatgcggatgccattcgttagaatgctcgaacgcctctgcaaggttctgtgctgccgttaacccgttttgtttggtcatgatactgatgtagtcacgctttatcg                                            >  2:440319‑M2/1‑49 (MQ=255)                                                                                                                                                                                                                       ttggttgtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGa                                 <  1:334734‑M1/218‑1 (MQ=255)                                                                                                                                                                                                                          acaaATGTTCTCAGCAGATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgccctatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctct                             <  2:163604‑M2/251‑218 (MQ=255)                                                                                                                                                                                                                             gtctggagattcagggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatatat                           >  1:74823‑M1/27‑250 (MQ=255)                                                                                                                                                                                                                                      agcagATCGAGGTCGAGGTTAAttgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgt                 >  1:402207‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                         agggggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc              <  2:187909‑M1/237‑1 (MQ=255)                                                                                                                                                                                                                                          gATCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgaggtagtcacgctttatcgttttcacgaagctctctgctattccgttact             >  1:163604‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                                           aTCGAGGTCGAGGTTAAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactc            >  2:110569‑M2/1‑17 (MQ=255)                                                                                                                                                                                                                                             ggccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCCATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCatat          <  2:124834‑M1/241‑1 (MQ=255)                                                                                                                                                                                                                                              gccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATc         >  2:371363‑M1/10‑251 (MQ=255)                                                                                                                                                                                                                                               ccagtctaGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTGCCGTTATAATGCCGGAAGTAGATCACAGAATATATCTACAGGGATCGCATATCt        >  2:412210‑M1/9‑251 (MQ=255)                                                                                                                                                                                                                                                     aggtTAAtggatttgcccctatatttcaaaacatctgttatcacttaacacattacaagcccgctgccgcagatcttcccgtcgcgagcgatcacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcctgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattcagttactctccggactcc  <  2:432226‑M2/251‑245 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                         TAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAG  >  NC_000913/2406366‑2406860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.