New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	27 (1.020)	27/490	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	4525972 =	0 (0.000)					intergenic (‑169/+134)	yjhI/sgcR	putative DNA‑binding transcriptional regulator YjhI/putative DNA‑binding transcriptional regulator SgcR

ATAACTTGCCATACCAACCCATGCAATGTGGGTTAATATTTTTTCAGCACGGACTAATGAATTACACCCTTTGCGAACCATAATGGCTCCTCCTTGCTCATGGAATAAATGGTATCGGCATTACATAGTGGAAAATATGCTTTGTTCAGCATGCTGAACCGTAATGATGTGATTAAATGTGATCTTGTACACACTTTGAATAATGAATCCAGAACAGCCACATTTAGTGAATGAGAATAAAAAGTAGATGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATCGTTTTAATACATGATAGTGT  >  NC_000913/4525723‑4526216                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                     ccaacgccattcatggccatatcaatgattttctggtgcgtaccgggttgcgaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtccgtagctgaacaggcgggacagctgataaaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggccgcatcaccg                                                                                                                                                                                                                                                      >  2:36308‑M2/250‑250 (MQ=255)     cgccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGgcgcg                                                                                                                                                                                                                                                 >  1:208950‑M2/246‑249 (MQ=255)                 ccatatcaatgattttctggagcgtaccgggttgagaagcggtgtaagtgaactgcagttgccaggttttacggcagtgagagcatagatagctctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagtaggcagcatcaccGGCTTGTTGTTGCAACAt                                                                                                                                                                                                                                     <  2:107176‑M2/18‑1 (MQ=255)                        aatgattttctggtgcgtaccgggttgaggagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAgtg                                                                                                                                                                                                                              >  1:183082‑M2/227‑251 (MQ=255)                                gctggtgcgtaccggggtgagaagcggtgtaagtgaactgcagtggccatgttttacggcagtgagagcagagatagcgctgaggtccggcggtgcgtttgccgttacgcgccaccccgtcagtagctgaacaggagggacagctgatcgatactgtagcctctggtgcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGGTGCAACATCGTAGTGTGTGGAt                                                                                                                                                                                                                       <  2:88712‑M2/32‑1 (MQ=255)                                        gtaccgggttgagaagcggcgtaagtgaactgcagttgccatgttttacggccgtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagaagctgaaccggagggacagctgatagaaacagcagccactgcagcacctcaaaaacaccaccatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGCGGATTGCGcc                                                                                                                                                                                                                 >  1:134172‑M2/211‑248 (MQ=255)                                          accgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagccgaggtagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggaggggccgctgatagaaacagaagccactggagcccctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGAAGTGTGTGGATTGCGCCTag                                                                                                                                                                                                              >  2:260919‑M2/209‑249 (MQ=255)                                                      agcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcacaaccccgtcagtagctgaaccggcaggacagctgatagaaacagaagcccctggagcaccacaacaaccccatcatacactaaatcagtaagttggcagcatcaccGCCGTGTTGTTGCCACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcg                                                                                                                                                                                                >  1:41308‑M2/197‑251 (MQ=255)                                                                        cagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAat                                                                                                                                                                              >  1:95899‑M2/179‑251 (MQ=255)                                                                                       acggcagtgagagccgcgatagcgcagatgtccggcggggcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcctacactaagacagtaagttggcagcatcaccGGCGTGTTGTTGCAACATAGTAGTGTGGGGGTTGAGCCTAGAGCTTCTTTATTCGTTCGCGCGCATCGGCAATATTTTCTATTGGGTg                                                                                                                                                               >  2:151070‑M2/164‑251 (MQ=255)                                                                                                           agcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTg                                                                                                                                           >  1:43433‑M2/144‑251 (MQ=255)                                                                                                                      ccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTTTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCctct                                                                                                                                 <  1:154377‑M2/118‑1 (MQ=255)                                                                                                                        ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATcc                                                                                                                                     >  2:25518‑M2/131‑244 (MQ=255)                                                                                                                        ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATcc                                                                                                                                     <  1:25518‑M2/114‑1 (MQ=255)                                                                                                                                               ccaccccgtcagtagatgaccaggagggccagctgatagaatcacaagccactggcgcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATAGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGTGCGCATCGCCTATATTTTCTATTGGGTGCCCTTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTAtt                                                                                                       >  2:91569‑M2/108‑251 (MQ=255)                                                                                                                                                            agctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGTTaaaa                                                                                          <  2:183082‑M2/157‑1 (MQ=255)                                                                                                                                                                            cagctgatggaaacaaaagccccgggagcacgtcaaaaacaccctcatagactaaaaaagtaagatggcagcatcaccGGCGTGTTGTTGCAACATCGTCGAGAGTGGATTGAGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCACTATTTTCTATTGGGTGCCATTGCTTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTTTTGACTGAGGTAAAAACAACTGACATCCGGc                                                                          >  2:162362‑M2/79‑251 (MQ=255)                                                                                                                                                                             agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTTTTGCATCATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGTCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTTCTTATCACCTTATTGAATTAGGTAAAAACAGCTGACATCCGGCt                                                                         <  2:18713‑M2/174‑1 (MQ=255)                                                                                                                                                                                  atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTg                                                                    >  1:829‑M2/73‑251 (MQ=255)                                                                                                                                                                                   tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTg                                                                    >  2:151846‑M2/72‑250 (MQ=255)                                                                                                                                                                                                cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTTATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCaa                                                      <  1:260919‑M2/193‑1 (MQ=255)                                                                                                                                                                                                                      catcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACAGCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTc                                <  1:237815‑M2/215‑1 (MQ=255)                                                                                                                                                                                                                         catacactaaatcagtaagttggcagcatccccGGCGTTTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGTTAACCCGCTGTCACt                             <  2:210647‑M2/218‑1 (MQ=255)                                                                                                                                                                                                                            acccgatatcagtaagttggcagcatcaccGGCGTGTTTTTGCAACATCGTTGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTGCTTATCACTTTATTGAATTAGGTAAAAACAACTGACATCCTGTTCGCTTATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACtgat                          <  1:103057‑M2/221‑1 (MQ=255)                                                                                                                                                                                                                                taaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATc                      >  1:41256‑M2/27‑251 (MQ=255)                                                                                                                                                                                                                                                cagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATCGTTTTAATACATGATa      <  2:43433‑M2/241‑1 (MQ=255)                                                                                                                                                                                                                                                    atcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATCGTTTTAATACATGATAgtgt  <  2:232308‑M2/245‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                     ATAACTTGCCATACCAACCCATGCAATGTGGGTTAATATTTTTTCAGCACGGACTAATGAATTACACCCTTTGCGAACCATAATGGCTCCTCCTTGCTCATGGAATAAATGGTATCGGCATTACATAGTGGAAAATATGCTTTGTTCAGCATGCTGAACCGTAATGATGTGATTAAATGTGATCTTGTACACACTTTGAATAATGAATCCAGAACAGCCACATTTAGTGAATGAGAATAAAAAGTAGATGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATCGTTTTAATACATGATAGTGT  >  NC_000913/4525723‑4526216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.