New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	27 (1.020)	27/490	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	4525972 =	0 (0.000)					intergenic (‑169/+134)	yjhI/sgcR	putative DNA‑binding transcriptional regulator YjhI/putative DNA‑binding transcriptional regulator SgcR

AAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGG  >  NC_000913/3583192‑3583676                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                          aaGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGATCAATGTATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAAc                                                                                                                                                                                                                                             >  2:56148/1‑251 (MQ=255)            cTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGAttt                                                                                                                                                                                                                                   >  1:146295/1‑250 (MQ=255)              ttttAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgt                                                                                                                                                                                                                                >  2:100438/1‑251 (MQ=255)                 tAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgtgt                                                                                                                                                                                                                              >  2:211741/1‑250 (MQ=255)                                      tACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGc                                                                                                                                                                                                         <  2:146295/250‑1 (MQ=255)                                          tttttAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTc                                                                                                                                                                                                       <  2:936/248‑1 (MQ=255)                                                                        aaTGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGgtg                                                                                                                                                                                                                     >  2:25065/1‑204 (MQ=255)                                                                        aaTGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGgtg                                                                                                                                                                                                                     <  1:25065/204‑1 (MQ=255)                                                                                                                                                 ataGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATATCATTTCAATATTTTCTTATGACATTAAAGGTTATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAATCTCCGCCGGACATCAGCGCTATCTCTGCTCTCACt                                                                                              <  1:26423/250‑1 (MQ=255)                                                                                                                                                          atgatgATTTCATAAACCCTGCTCTACACGATCGGTTAGTGCTCGGGGATTATCGCATTTCAATATTTCCTTATGACATTAAAAGTGATGCTGCCCACTTACTGCTTTAGTGTATGATTGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCATCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCACACGCACCGCCGGCCATCAGCGCTATCTCTGCTCTCCCTTCCGTCAAAc                                                                                    >  2:227973/1‑251 (MQ=17)                                                                                                                                                            gatgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACa                                                                                   >  2:239641/1‑250 (MQ=255)                                                                                                                                                                atTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGc                                                                              >  1:101513/1‑250 (MQ=255)                                                                                                                                                                atTTCAGAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTGCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCa                                                                             <  1:251999/251‑1 (MQ=255)                                                                                                                                                                         aCCCTGATCTACAAAAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTAGGATGGTGTTTTTGTGGTGCTCGTGTGGCTTCTGTTTCTAACATCTGTCCCTCCTGTTCAGCTAGTGACGGGGTGTTGCGTAACGGCAAAAGCACGGCCGGACATCAGCGCTATCGCTGCTCTCACTGCCGTaatgcaggtcagctgcagtt                                                                     <  2:139006/251‑19 (MQ=18)                                                                                                                                                                           ccTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTCCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCa                                                                  <  2:220223/251‑1 (MQ=255)                                                                                                                                                                                   aCAAGAACGGTTAGCGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACAcc                                                          >  1:219632/1‑251 (MQ=255)                                                                                                                                                                                       gAACGGTTAGTGATCGGGGATGATAGCATTTCACTATTTACTTATGACATTAAAGGTGATGATGCAAACTTACTGATTTAGTGCATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATAAGCTGTCCATCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAACAGCCACGCCGGACATAAGCGCTCTCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCGCtt                                                      >  2:247741/1‑251 (MQ=17)                                                                                                                                                                                             ttAGTGATGGGGGGTTATAGCATTTCAATATTTACTTATGATATTAAAGGTGATGCTGCAAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAATCACCGCCGGCCATCAGCGCTATCGCGGGTATCACTGCCGTAAAACA‑TGGCAACTGCAGTTAACTTacacagacactcaac                                                >  2:210681/1‑240 (MQ=14)                                                                                                                                                                                                 tGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGCTGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAACCA‑TGGCAACTGCAGTTCACTTACACCGCTTCTCAAccc                                              >  1:203281/1‑249 (MQ=255)                                                                                                                                                                                                                  aTTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAACGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACC‑TGGCAACTGCAGTTCACTTACACCGCTTCTCACCCCGGTACGCCCCAGAAAATc                            >  2:87252/1‑250 (MQ=255)                                                                                                                                                                                                                      cAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTTTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCTCTTCTCAACCCGGTACGCACCAGAAAATCATTGa                       <  1:207463/251‑1 (MQ=255)                                                                                                                                                                                                                               cTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCAt              >  1:112056/1‑251 (MQ=35)                                                                                                                                                                                                                                ttATGAAATTCAAGGTGTTGCTGCCAACTTACTGCTTTCGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATCTGGCCATg             >  2:107988/1‑251 (MQ=255)                                                                                                                                                                                                                                  aTGACATTAAAGGTGATGCTGCCAACTTACGGATTTAGTGTATGATGGTGTTTTTGAGTTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑GGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGa            <  1:245177/250‑1 (MQ=21)                                                                                                                                                                                                                                    gACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATg         >  1:32414/1‑251 (MQ=33)                                                                                                                                                                                                                                          aaaGGTGATGCCGCCAACTTACTGATTTAGTGCATGACGGAGTTTATGAGGTGCTCCAGTGGCTTCTGTTTCCATTAGCTGTCCCTCCTGATCAGATACTGACGGGGAGGTGCGTAAAGGCAAAAGCACAGACGGACATCAGCGCTATCTCTGCTCTCAGTACAG‑AAAACACTGGCAATCGCAGTACACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATAAATGATATGGCCATGGATGGCGTTg   >  2:157383/1‑251 (MQ=2)                                                                                                                                                                                                                                           aaGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTgg  >  1:261455/1‑251 (MQ=11)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                          AAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACA‑TGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGG  >  NC_000913/3583192‑3583676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.