| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2170171 = | NA (NA) | 19 (1.010) +CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA |
11/350 | 0.5 | NA | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 4519239 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
CCTTTGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTTCAATCTGCC > NC_000913/4518995‑4519483 | ccTTTGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAAGCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATTACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcc > 1:129816‑M2/1‑245 (MQ=255) gTATAGATGACGGATGGCTGGCCGATGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactaaaaact < 2:253263‑M2/250‑20 (MQ=255) aTGACGGATGGCTGGCCTCAGCATGAATCACGCCTGAGGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATATGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGGGGAGTTGCATGACAAGGTAATCGGGCATTCTCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatac < 2:60326‑M2/251‑27 (MQ=255) gctggcCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattac > 2:75346‑M2/1‑215 (MQ=255) ggcCGCTGTATGAATCACGCCTGAAGTGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattacc > 2:244583‑M2/1‑212 (MQ=255) gTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGATACAACATCTGGCAAGGCTGGGACGGAAGGTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGTGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagcaagcatatagataattactggttaacc > 2:242142‑M2/1‑205 (MQ=255) tATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAATCGTTACACTCAGCGCATTGAGCGACATAAGCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcagacagataattactggttatccc > 1:65156‑M2/1‑204 (MQ=255) aaTCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatat < 1:243044‑M2/251‑52 (MQ=255) aGCTGCACGTTAGCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAAGCTGAGACAACAGCTGGCAAGGGTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACAGAAAACACTATCAGGAAGTTGGAGTCATTTCCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgtt > 1:27299‑M2/1‑182 (MQ=255) gCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtg > 2:76007‑M2/1‑178 (MQ=255) gCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtg > 1:84049‑M2/1‑178 (MQ=255) gcATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggct > 2:96312‑M2/1‑149 (MQ=255) aTTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTAccaacgag < 2:189784/153‑7 (MQ=255) aTTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaa > 2:161750‑M2/1‑147 (MQ=255) aTTGAGCGACATAATCTGAATATGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTAccaacgag > 1:189784/1‑147 (MQ=255) tAATCTGAATCTGAGACCACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaact < 1:88744‑M2/251‑116 (MQ=255) acaacaTCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTAGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtg < 1:3526‑M2/250‑130 (MQ=255) caTCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca > 1:266343‑M2/1‑117 (MQ=255) ggCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaaga > 1:228607‑M2/1‑112 (MQ=255) cGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttca > 2:88744‑M2/1‑99 (MQ=255) cGTTCTCAAAATCGGTTGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaa > 2:104028‑M2/1‑86 (MQ=255) cATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcggagttaag > 2:117108‑M2/1‑52 (MQ=255) aTCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggccttttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagtta < 1:247661‑M2/248‑198 (MQ=255) gggCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatataggtcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaactccattcgcatgaatttcgtagttaagatct > 1:12138‑M2/1‑48 (MQ=255) gCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacgccattcgcatgaatttcgtagttaagatctga > 2:63411‑M2/1‑46 (MQ=255) aTCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctaccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaagctt < 2:202938‑M2/251‑211 (MQ=255) aGTAAGTTGGAGTCATTACCtcctcccgaactcacagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaagcttgcagaatgcatcggtgttact < 2:28741‑M2/251‑232 (MQ=255) gAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaagcttgcagaatgcatcggtgttactgccggagtc > 1:77334‑M2/1‑11 (MQ=255) cATTACCtcctcccgaactcaaagtaatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtggctcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagacctgaagcttgcagaatgcatcggtgttactgccggagtccgtg > 2:172117‑M2/1‑7 (MQ=255) cATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggcaaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgcagcttgcagaatgcatcggtgttactgccggagtccgtg < 2:153342‑M2/251‑245 (MQ=255) | CCTTTGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTTCAATCTGCC > NC_000913/4518995‑4519483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |