New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2170171 =	NA (NA)	19 (1.010) +CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA	11/350	0.5	NA	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 4519239	NA (NA)					noncoding (768/768 nt)	IS1	repeat region

AAACATTAAATCGGCATTAATATCCTGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGGAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTG  >  NC_000913/2169942‑2170416                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                       aaaCATTAAATCGGCATTAATATCCTGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCCGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGGAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTgg                                                                                                                                                                                                                                  >  1:222016/1‑251 (MQ=255)              gCATTAATATCCTGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGGAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAg                                                                                                                                                                                                                     <  1:256452/251‑1 (MQ=255)                                gAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGTAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTCCCCAGCAATAGTGGACACGCGGCTAAGGGAGTAAACTCtcagtca                                                                                                                                                                                                   <  2:113416/251‑1 (MQ=255)                                       cGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGGAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg                                                                                                                                                                                             >  1:81631/1‑250 (MQ=255)                                            aTGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGGAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTGCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                                                                                                                                       <  2:222016/251‑1 (MQ=255)                                                                                              gacCAGCGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGGAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                                                                                                                                     >  1:68153/1‑251 (MQ=255)                                                                                                    gttatggTCTTTATTA‑CGGAAAAGGCAAACGG‑TGCCCGGAGACTGTTTGGTA‑TCCCCCTGATATTTTTTGCGGTCAATAATCCTTCCGCCAAAAGCATTTGCCTTCCTCCCCCGGCGAGAAAAACGGTCTTGA‑CTTACCCAGCAATAGTTGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACTAAAACAGTATTAACCAGGAAAAAACCCCGTAAACAGCATTCGCCTTAAttt                                                                                                                              <  2:261910/245‑1 (MQ=9)                                                                                                                       gacaGGGCAAACGCGTGC‑GAGAGACTGTT‑GGTAATCACCGTGATACTTTTGGCGGTCATTAATCCTTCGGCGATAAGCAGTGTCGTAAGTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAAGAGTGGACACTCGGCTAAGTGAGTAAACGCTCAGTCAGAGTGGACACACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGGAAACAGAAGTCGCCTTAATTGCGCATTGATGccttgtac                                                                                                            <  2:39664/248‑7 (MQ=18)                                                                                                                          aGGGCAAACGA‑TGCCGGGAGACTTTT‑GGTAATCACCGGGTTATTGTTGTCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTATTTCCGCTGTCGAGAATAACTGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGCGATTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAATAGGATCGACCAGTAAAAATCCCCGTATACATCTGACGCCTGAATTTCTCAGTGAAGCCCTGAATCtt                                                                                                         <  2:169947/251‑1 (MQ=18)                                                                                                                                                                                 cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTAAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGAAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATc                                                    >  1:45406/1‑251 (MQ=255)                                                                                                                                                                                    tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATcac                                                  >  2:218953/1‑250 (MQ=255)                                                                                                                                                                                                 aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACACAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCATGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGACCGTGAACTCAGCCTGTATGAATCACAACTCTACACCTgg                                    >  2:148027/1‑251 (MQ=255)                                                                                                                                                                                                            cGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTTCTGAACg                                                                                                 <  2:26412/179‑1 (MQ=255)                                                                                                                                                                                                            cGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACg                                                                                                 >  1:26412/1‑179 (MQ=255)                                                                                                                                                                                                                 ttCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGAGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCaa                     >  2:134854/1‑250 (MQ=255)                                                                                                                                                                                                                          cGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATcagc              >  1:101325/1‑248 (MQ=35)                                                                                                                                                                                                                                   aggTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTTCAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTg  <  2:88066/250‑1 (MQ=11)                                                                                                                                                                                                                                    ggTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTg  >  1:69792/1‑250 (MQ=11)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                       AAACATTAAATCGGCATTAATATCCTGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGC‑TGCCGGGAGACTGTT‑GGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCT‑GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTG  >  NC_000913/2169942‑2170416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.