| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,699 | IS1 (+) +9 bp | coding (286‑294/312 nt) | ymdA → | uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 290634 = | NA (NA) | 22 (0.830) | 19/490 | 0.4 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1105699 = | 0 (0.000) | coding (286/312 nt) | ymdA | uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 17 (0.640) | 17/490 | 0.5 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1105707 | 0 (0.000) | coding (294/312 nt) | ymdA | uncharacterized protein YmdA | |||||
CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTCATTAATGGGAGGCGGCGGCGTCGATGGGGCCATTCATCGCGCAGCGGGTCC > NC_000913/1105462‑1105950 | gtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACAt < 1:266661‑M2/14‑1 (MQ=255) ttttATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatg < 2:149863‑M2/251‑8 (MQ=255) ggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCg < 2:80103‑M2/16‑1 (MQ=255) ggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaagctgaggcagcacctggtacggctgggacggaaggcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaagaagttggagtcattgccGCGGTAAGGATCATCg < 2:251052‑M2/16‑1 (MQ=255) atatggatgacggagggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctggcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggaggcatgaccGCTGTAATGAACATCGAata < 2:236044‑M2/20‑1 (MQ=255) aTTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctg > 1:149546‑M2/1‑240 (MQ=255) ggatgacggatggctggccgttgtatgaatcccgcttgaagggaaagctgcacgtaatcagcaagcgatttacgcagcgaattgagcggcataacctgaatctgatgcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggtatgatctgaacataaaacactatcaaaaagttggagtgagtaccGCTGTAATGTACAGCGAATATAAc < 2:251695‑M2/24‑1 (MQ=255) gccgttgtatgaatcccgcctgaagtgaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTCaacaac < 2:113382‑M2/40‑1 (MQ=255) atatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggacgtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGAAGAAAAATGCGATTTAACAAAAAAGCGTGCTGTacac > 2:198643‑M2/161‑251 (MQ=255) gTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtgg < 1:261036‑M2/251‑108 (MQ=255) attctgaggcagctccgggcacggcttggaccgaagtcgctgtcgttcgcaaaatcggtggagccgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAAGGCGATTTAACCAAAAAGTCTGCTGTACACCTAAGAAACAATAAGGTGTAATGAGGCGTTa < 2:228817‑M2/122‑1 (MQ=255) ggaggcagcacctggcacggctgggacggaaggcgctgtcgttctcaaaagcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTTAGCAGAAAAATGCGATTTAACCAAAAAGTCTTCTGTGCACTTAAGAAACAAGATGGTGTAAGGAGGCGGTATGaa < 2:169129‑M2/126‑1 (MQ=255) gaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGaa > 2:62708‑M2/125‑250 (MQ=255) gCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggc > 1:149863‑M2/1‑131 (MQ=255) cctggaagggctggaacggcagtcgctgtcgatctcaaaatcggtggagcagcatgacaaagtcatcggacattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACCTCGAATATAACTACGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAACCAAGAAGGTGTAAGGAGGCGTTATGAAACCGCGTAtt > 2:114801‑M2/116‑251 (MQ=255) gagctagTCCGGGCAAAACCTACGCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTTCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgcggccaacgtactgatttagtgtatgatggtgtttttgaggtgcgccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcttaacggcaaaagcactgccgg > 1:134127‑M2/4‑119 (MQ=255) ggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCAtgttgt > 1:97595‑M2/108‑251 (MQ=255) aTTCCGGGCAAAAACTACTCAAGCAAAGCGTTACTGAGCCGGACTGTCATAAACGCGCAAATAGACTCCGTACAAGCGCAGAATCTTGCTAAACAAAAAAAGCTGGCTGTAATGggtgatgctgccaaattactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagatgtccctcctgttcagcttctgacggggtggtgcgtcacggcaaaagcactgccgg < 2:134127‑M2/246‑133 (MQ=255) ggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAgg > 1:31184‑M2/103‑251 (MQ=255) cgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAAc < 1:75596‑M2/164‑1 (MQ=255) ggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagtttgagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGAtt < 1:173984‑M2/181‑1 (MQ=255) aGCGGCAATGTCAAAAACGCGCACATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacctggc < 2:14258‑M2/251‑174 (MQ=255) gTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagt > 2:41971‑M2/1‑69 (MQ=255) cAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttc > 1:1059‑M2/1‑67 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTaa < 2:41447‑M2/195‑1 (MQ=255) aaaCGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcact > 1:195178‑M2/1‑64 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATc > 1:226300‑M2/55‑251 (MQ=255) aCGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcactta > 1:218942‑M2/1‑62 (MQ=255) tcgggcgttatctgaacataaaacactatcaatcagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTc > 2:181616‑M2/51‑251 (MQ=255) cAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccg > 1:132267‑M2/1‑57 (MQ=255) ccTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctca > 1:114305‑M2/1‑50 (MQ=255) aaaaGTGCAGTATCTGGATAAACAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtggttttgaggtggtccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaatcactgccggacatcagcgctatctcttctctcactgccgtaaaacatggcaactgcagttcacttacactgcttctcaacccggt > 2:132055‑M2/1‑43 (MQ=255) ctatcactaagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAACATGCGATTTAACCAAAAAACCTGCTGTACACTTAAGAAACAAGAAGGAGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGAGAATGCGGCTCATCCGTCATTAATGGGAGGAGGCGGCGTCGAt > 1:153871‑M2/26‑251 (MQ=255) ctatcaataagttggagtcattaccGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTCATTAATGGGAGGCGGCGGCGTCGAt > 2:202535‑M2/26‑251 (MQ=255) cAGAAAAAGCTGGCTGTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgat < 1:113382‑M2/250‑230 (MQ=255) gagtaattaccGCTGTAATGAACATCGAATATAACTAAGTTTATGAACAACTCACGTTGCTGAGCAGAAAAATGAGATTTAAACAAAAATCCTGCTGTACACTAAAGAAACAAGACGGTGTAAGGAGGCGTTATGAAAACGCGTATTAATGTTGTGAAGGGAGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATACGTAATTAATGGGCGGCGGAGGCGTCGATGGGGCCATTCAt > 1:244978‑M2/12‑249 (MQ=255) tggctgTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacacagcttctcaacccggtacgcaccagcacatcattgatatggccatga < 1:169129‑M2/250‑240 (MQ=255) ctgTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatctggccatgaatgg < 1:88729‑M2/251‑244 (MQ=255) | CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAAATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGAACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTCATTAATGGGAGGCGGCGGCGTCGATGGGGCCATTCATCGCGCAGCGGGTCC > NC_000913/1105462‑1105950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |