New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	271762 =	NA (NA)	30 (1.150)	22/486	0.3	NA	noncoding (1/429 nt)	IS911	repeat region
	?	NC_000913	= 4507456	NA (NA)					noncoding (332/334 nt)	IS911	repeat region

AAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTG  >  NC_000913/4507208‑4507697                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  aaaTTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTAc                                                                                                                                                                                                                                                 >  2:80774/1‑251 (MQ=255)             agagTTTAAACGCGACTACGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCCGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATATGTAAGCTGAGGAAAAAGCTAAAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgat                                                                                                                                                                                                                                     <  2:89523‑M2/251‑15 (MQ=255)                      aCGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGAATTGACATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactc                                                                                                                                                                                                                            <  1:171125‑M2/251‑24 (MQ=255)                       cgcgAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactcc                                                                                                                                                                                                                           <  1:208541‑M2/251‑25 (MQ=255)                                     aCTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcg                                                                                                                                                                                                             >  2:129864‑M2/1‑213 (MQ=255)                                              tgACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacaggtagcgataatcgg                                                                                                                                                                                                     >  2:1896‑M2/1‑204 (MQ=255)                                              tgACAAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACACTGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACAACAGAACAAATCGAAATACGGAAGCTGAGGAAAAAGCTACAACGAATTGAAATGGAGAATGCAATATTAACAAGGCTaccgcgctattgatgacagactccctgaacagttatcgataatcggg                                                                                                                                                                                                    <  2:105581‑M2/251‑48 (MQ=255)                                                aCCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGACATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcggga                                                                                                                                                                                                   <  2:260631‑M2/250‑49 (MQ=255)                                                aCCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGACTGAAATATTAAAAAGGCTaccgcgatcttgatgtcagactccctgaacagttctcgataatcggga                                                                                                                                                                                                   <  2:7244‑M2/250‑49 (MQ=255)                                                            cGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTTCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgca                                                                                                                                                                                      >  2:18001‑M2/1‑190 (MQ=255)                                                                  cAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGAAAGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgaattatcc                                                                                                                                                                                <  1:135522‑M2/251‑68 (MQ=255)                                                                                                             aaGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagc                                                                                                                                     >  1:80774‑M2/1‑141 (MQ=255)                                                                                                                   ggTCAAACAACTGCGTGATGAGAGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGCAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactcactgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggatcatcgcagcagctac                                                                                                                                  <  1:45779‑M2/248‑114 (MQ=255)                                                                                                                           aacTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAAACGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaa                                                                                                                       >  2:208541‑M2/1‑127 (MQ=255)                                                                                                                                    atgaGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcc                                                                                                              >  1:260631‑M2/1‑118 (MQ=255)                                                                                                                                          gTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGACATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaa                                                                                                         <  1:113516‑M2/250‑139 (MQ=255)                                                                                                                                          gTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaa                                                                                                         <  1:41181‑M2/250‑139 (MQ=255)                                                                                                                                              gggCAAAACACCAAAAGCCTCTCCGATAAAACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGATACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgatactcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagaagctacagatactggaaaaaccgtcctgaagaacc                                                                                                     <  2:109730‑M2/250‑143 (MQ=255)                                                                                                                                                                 tctcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGCAAAAGCTACAGCGCATTGAAGTAGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactcactgaacagttctcgataatcgggcaactcagggcgcattatcctgtggtaacactctgccgtgtgatcggagtgcatcgcagcagctacagatactggaaaagccgtcctgaaaagccagacggcagacgggctgtat                                                                                 <  1:64543‑M2/251‑163 (MQ=255)                                                                                                                                                                      gATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAACGCTACCACGCATTGAAATGGAGAATGACATATTAACAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgc                                                                            <  1:239261‑M2/251‑168 (MQ=255)                                                                                                                                                                               aGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggta                                                                   >  1:87414‑M2/1‑75 (MQ=255)                                                                                                                                                                               aGAACAAATCGAAATACGGAAGCAGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactgtaaaaaccgccctgaaaaaccagacggcagacgggctgtattacgcagtcaggta                                                                   >  2:122177‑M2/1‑75 (MQ=255)                                                                                                                                                                                gAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagct                                                                                                                                    <  1:46444‑M2/185‑112 (MQ=255)                                                                                                                                                                                gAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcagcgcagcagct                                                                                                                                    >  2:46444‑M2/1‑74 (MQ=255)                                                                                                                                                                                           aaTACGTAAGCGGAGGAAAAAGCGACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgctctcttgatgtcagactccctgaacagttctctataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatacttgaaaaaccgtcctgaaaagccatacggcagacgggccgtagtacgcagtctgttacttgagctacat                                                       >  2:171125‑M2/1‑63 (MQ=255)                                                                                                                                                                                                             aaaGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgttggcacactctgccatgtgttcggggttcatcgcagcagctacagatgctggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcg                                     >  1:89523‑M2/1‑45 (MQ=255)                                                                                                                                                                                                             aaaGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcg                                     >  2:2174‑M2/1‑45 (MQ=255)                                                                                                                                                                                                             aaaGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcg                                     <  1:2174‑M2/251‑207 (MQ=255)                                                                                                                                                                                                                      aCGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcggccggagc                             <  1:59693‑M2/250‑215 (MQ=255)                                                                                                                                                                                                                           ttGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcggccggagcaaga                         <  1:41345‑M2/249‑219 (MQ=255)                                                                                                                                                                                                                                                 aaaaaGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcggccggagcaagaagcatcgccacaatggcaacccg  >  1:109730‑M2/1‑9 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  AAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTG  >  NC_000913/4507208‑4507697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.