New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	271762 =	NA (NA)	30 (1.150)	22/486	0.3	NA	noncoding (1/429 nt)	IS911	repeat region
	?	NC_000913	= 4507456	NA (NA)					noncoding (332/334 nt)	IS911	repeat region

CCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGCCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCA  >  NC_000913/271525‑272002                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                 agagtttaaacgcgactacgctcaactggttgttgaccagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaactgcgtgatgagcgtccgggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatatgtaagctgaggaaaaagctaaaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGAt                                                                                                                                                                                                                                     <  2:89523‑M1/14‑1 (MQ=255)          acgcgaatccgctcaactggttgttgaccagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgaattgacatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTc                                                                                                                                                                                                                            <  1:171125‑M1/23‑1 (MQ=255)           cgcgaatccgctcaactggttgttgaccagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTcc                                                                                                                                                                                                                           <  1:208541‑M1/24‑1 (MQ=255)                         actggttgttgaccagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCg                                                                                                                                                                                                             >  2:129864‑M1/214‑251 (MQ=255)                                  tgaccagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGGTAGCGATAATCgg                                                                                                                                                                                                     >  2:1896‑M1/205‑250 (MQ=255)                                  tgacaagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacactgacaagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaacagaacaaatcgaaatacggaagctgaggaaaaagctacaacgaattgaaatggagaatgcaatattaacaaggctACCGCGCTATTGATGACAGACTCCCTGAACAGTTATCGATAATCggg                                                                                                                                                                                                    <  2:105581‑M1/47‑1 (MQ=255)                                    accagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgacatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGa                                                                                                                                                                                                   <  2:260631‑M1/48‑1 (MQ=255)                                    accagaaatacacggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagactgaaatattaaaaaggctACCGCGATCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGa                                                                                                                                                                                                   <  2:7244‑M1/48‑1 (MQ=255)                                                cggtggcagatgccgcgaaagctatggatgttggcctttccacaatgacaagatgggtcaaacaacttcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGagcgca                                                                                                                                                                                      >  2:18001‑M1/191‑250 (MQ=255)                                                      cagatgccgcgaaagctatggatgttggcctttccacaatgacaagaaaggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAAtcgggaaactcagagcgaattatcc                                                                                                                                                                                <  1:135522‑M1/67‑13 (MQ=255)                                                                                                 aagatgggtcaaacaactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCagcagc                                                                                                                                     >  1:80774‑M1/142‑251 (MQ=255)                                                                                                       ggtcaaacaactgcgtgatgagagtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgcaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCACTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGATCATCGCAGCAGCTAc                                                                                                                                  <  1:45779‑M1/113‑1 (MQ=255)                                                                                                               aactgcgtgatgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaaacgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGaa                                                                                                                       >  2:208541‑M1/128‑251 (MQ=255)                                                                                                                        atgagcgtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTcc                                                                                                              >  1:260631‑M1/119‑251 (MQ=255)                                                                                                                              gtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgacatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGaaa                                                                                                         <  1:113516‑M1/138‑1 (MQ=255)                                                                                                                              gtcagggcaaaacaccaaaagcctctccgataacaccagaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGaaa                                                                                                         <  1:41181‑M1/138‑1 (MQ=255)                                                                                                                                  gggcaaaacaccaaaagcctctccgataaaaccagaacaaatcgaaatacgtaagctgaggaaaaagatacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATACTCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGAAGCTACAGATACTGGAAAAACCGtcctgaagaacc                                                                                                     <  2:109730‑M1/142‑6 (MQ=255)                                                                                                                                                     tctccgataacaccagaacaaatcgaaatacgtaagctgaggcaaaagctacagcgcattgaagtagagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCACTGAACAGTTCTCGATAATCGGGCAACTCAGGGCGCATTATCCTGTGGTAACACTCTGCCGTGTGATCGGAGTGCATCGCAGCAGCTACAGATACTGGAAAAGCCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTAt                                                                                 <  1:64543‑M1/162‑1 (MQ=255)                                                                                                                                                          gataacaccagaacaaatcgaaatacgtaagctgaggaaaacgctaccacgcattgaaatggagaatgacatattaacaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGc                                                                            <  1:239261‑M1/167‑1 (MQ=255)                                                                                                                                                                   agaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTa                                                                   >  1:87414‑M1/76‑251 (MQ=255)                                                                                                                                                                   agaacaaatcgaaatacggaagcagaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGTAAAAACCGCCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTa                                                                   >  2:122177‑M1/76‑251 (MQ=255)                                                                                                                                                                    gaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCt                                                                                                                                    <  1:46444‑M1/111‑1 (MQ=255)                                                                                                                                                                    gaacaaatcgaaatacgtaagctgaggaaaaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCAGCGCAGCAGCt                                                                                                                                    >  2:46444‑M1/75‑185 (MQ=255)                                                                                                                                                                               aatacgtaagcggaggaaaaagcgacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCTCTCTTGATGTCAGACTCCCTGAACAGTTCTCTATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTTGAAAAACCGTCCTGAAAAGCCATACGGCAGACGGGCCGTAGTACGCAGTCTGttacttgagctacat                                                       >  2:171125‑M1/64‑244 (MQ=255)                                                                                                                                                                                                 aaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTTGGCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATGCTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGccacggttcg                                     >  1:89523‑M1/46‑247 (MQ=255)                                                                                                                                                                                                 aaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGccacggttcg                                     >  2:2174‑M1/46‑247 (MQ=255)                                                                                                                                                                                                 aaagctacaacgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGccacggttcg                                     <  1:2174‑M1/206‑5 (MQ=255)                                                                                                                                                                                                          acgcattgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCACGGTTCGGCCGGAGc                             <  1:59693‑M1/214‑1 (MQ=255)                                                                                                                                                                                                               ttgaaatggagaatgaaatattaaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCACGGTTCGGCCGGAGCaaga                         <  1:41345‑M1/218‑1 (MQ=255)                                                                                                                                                                                                                                     aaaaaggctACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCTGTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCACGGTTCGGCCGGAGCAAGAAGCATCGCCACAATGGCAacccg  >  1:109730‑M1/10‑249 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                 CCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGCCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCA  >  NC_000913/271525‑272002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.