New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 44981812 (0.030)39 (0.640) 35/478 0.6 96.4% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 4499518 = 1 (0.020)intergenic (+18/‑1742) insD6/yjgZ IS2 insertion element protein InsB/uncharacterized protein YjgZ

AAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAG  >  NC_000913/4497931‑4498424
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   
aaaaCAGTAATCATCCCGTGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGt                                                                                                                                                                                                                                                     <  1:75798/251‑1 (MQ=255)
 aaaCAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACATGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTg                                                                                                                                                                                                                                                    <  2:193114‑M1/251‑2 (MQ=255)
            atcCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTCCCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaat                                                                                                                                                                                                                                         <  2:525532‑M1/251‑13 (MQ=255)
                           ccGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatac                                                                                                                                                                                                                          >  2:101205‑M1/1‑224 (MQ=255)
                                                          tAAAAAAGACAAACGGAATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGCATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtatt                                                                                                                                                                                            >  1:466021‑M1/1‑193 (MQ=255)
                                                            aaaaaGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgaattac                                                                                                                                                                                          >  2:588000‑M1/1‑191 (MQ=255)
                                                                             tAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTAACAGGGTGATGCGGGATAACTGACGTAAGGAGTGATGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgatt                                                                                                                                                                        >  1:422444‑M1/1‑174 (MQ=255)
                                                                                                                gggggATTATCAGAATCCGCGGATATTCATTATTTATATACATGCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAATGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgagtacctgtgatcaggaagaataagtggctgaggtttc                                                                                                                                     <  2:199264‑M1/251‑113 (MQ=255)
                                                                                                                      ttATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactg                                                                                                                               >  1:182888‑M1/1‑133 (MQ=255)
                                                                                                                         tCAGAATCCGCGGTTATTCATTACTTATATACATTCAATACAACAGTACCCTCATAAAAACTCCTTTACTCACAGGGTGATGCAGGATAACTGACGTCAGGAGTGATGCAGGGATTTGCGGGTCCCTTGTgctgatatggatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaacttact                                                                                                                            >  2:337444‑M1/1‑130 (MQ=255)
                                                                                                                          cAGAATCCGTGGATATTCATTATTTATATAAATTAAATAAACAAGGAACCTCATAAAAAATCCTGTACTCACAGAGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatctatgattacctgtgatcagtaagaatacgtggctgaggtttcaaactgtctg                                                                                                                           >  1:194878‑M1/1‑129 (MQ=255)
                                                                                                                            aaatacgcggttatTCATTATTTATATACATTCCATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGAATAACTGACGTAAGGAGTGCTGAAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatataagattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgac                                                                                                                         >  2:366686‑M1/6‑127 (MQ=255)
                                                                                                                                    ggTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaat                                                                                                                                                     <  2:141811‑M1/215‑97 (MQ=255)
                                                                                                                                    ggTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaat                                                                                                                                                     >  1:141811‑M1/1‑119 (MQ=255)
                                                                                                                                         ttCATTATTTATATACATTCAATAAAAACGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctct                                                                                                            >  2:2720‑M1/1‑114 (MQ=255)
                                                                                                                                                 ttatATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctccctt                                                                                                     >  2:345762‑M1/1‑106 (MQ=255)
                                                                                                                                                       aCATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaacc                                                                                              <  2:150153‑M1/251‑152 (MQ=255)
                                                                                                                                                           tCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccata                                                                                           >  1:205027‑M1/1‑96 (MQ=255)
                                                                                                                                                            cAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACTGAAGGAGTGCTGCAGGGATTTGATTGTCCCTTGTgctgatatgaatacggatattttagacagaatacgttgcagtacaagcgactgtattacagtctgccatatatgaggacctgtgatcaggaagaataagtgtctgaggttgcaaactgtctgccggtatattcctctctcccgtaaagaccatatc                                                                                         <  2:307870‑M1/251‑157 (MQ=255)
                                                                                                                                                               tAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacagg                                                                                      >  1:110503‑M1/1‑92 (MQ=255)
                                                                                                                                                                 aaaaaGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacagggt                                                                                    <  2:284824‑M1/251‑162 (MQ=255)
                                                                                                                                                                       aaccctcaTAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctcgctcccttaaaaaccatatcaggttagttat                                                                              <  1:161268‑M1/248‑168 (MQ=255)
                                                                                                                                                                        aaCCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatc                                                                             >  1:88950‑M1/1‑83 (MQ=255)
                                                                                                                                                                                 aaaaaTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgt                                                                    >  1:174396‑M1/1‑74 (MQ=255)
                                                                                                                                                                                 aaaaaTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagtgatcttcgtctgt                                                                    <  2:110503‑M1/251‑178 (MQ=255)
                                                                                                                                                                                  aaaaTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtc                                                                   <  1:345762‑M1/251‑179 (MQ=255)
                                                                                                                                                                                        cTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCCGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcgg                                                              >  1:415830‑M1/1‑67 (MQ=255)
                                                                                                                                                                                          gTACTCACAGGGTGATGCGGGAGAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtttgccatatatgattacctgtgatcaggaagaataagtggctgaggtgtcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcgga                                                             <  1:110821‑M1/249‑185 (MQ=255)
                                                                                                                                                                                            aCTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattg                                                          >  1:128084‑M1/1‑63 (MQ=255)
                                                                                                                                                                                              tCACAGGGTGATGCGGGATAACTGAAGTACGGAGCGCTGCAGGGCTTTGCTGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtccgcggattgaat                                                       >  2:298714‑M1/1‑61 (MQ=255)
                                                                                                                                                                                               cacaGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatg                                                      >  2:375289‑M1/1‑60 (MQ=255)
                                                                                                                                                                                                    ggTGATGCGGGCTAACTGACGAAAGGAGCGCTGCAGGGATTTGATGGTCCCTTGAgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattccagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggt                                                 >  2:550252‑M1/1‑55 (MQ=255)
                                                                                                                                                                                                            gggaatactgacgTAATGAGTGCTGCATGGATTTGATGGTCCCTTGTgatgatattaaaacgtatatattattcagaatactttccagtacaagcgactgtattacagtctgccatatatgattacctgtgatcagaaagaataagtggctgaggtttcaaactgtcttccggtatattcctctcacccttaaaaaccataacaggttagttatcttcttctgtcagctgattgaatggctgtatattttc                                         <  1:159654‑M1/245‑205 (MQ=255)
                                                                                                                                                                                                                      aCGTAAGGATTGCTTCAGGGATGTGAAGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaatcgactgtattacagtctgccatatatgattcccggtgatcaggaagaataagtggctgaggtttcaaactgtctgtcggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggtatatgttcagtacaaata                               <  2:207751‑M1/251‑215 (MQ=255)
                                                                                                                                                                                                                                    gcAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggtatattttcagtacaaataccggtcatccac                   <  1:101205‑M1/249‑227 (MQ=255)
                                                                                                                                                                                                                                    agaggtgacgatgttgccacagTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCTGCAAc                                        <  2:424150/207‑1 (MQ=11)
                                                                                                                                                                                                                                    agaggtgacgatgttgccacagTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAAc                                        >  1:424150/22‑228 (MQ=2)
                                                                                                                                                                                                                                             tGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggtatattttcagtacaaataccggtcatccaatgaaaaatacc        >  2:307656‑M1/1‑14 (MQ=255)
                                                                                                                                                                                                                                               aTGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtc                                                                                                                             >  1:308376‑M1/1‑12 (MQ=255)
                                                                                                                                                                                                                                               aTGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagcggctgaggtttcaaactgtc                                                                                                                             <  2:308376‑M1/132‑121 (MQ=255)
                                                                                                                                                                                                                                                    cccTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggtatattttcagtacaaataccggtcatccactgaaaaatacctgcgaa  >  1:61072‑M1/1‑7 (MQ=255)
                                                                                                                                                                                                                                                    cccTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggtatattttcagtacaaataccggtcatccactgaaaaatacctgcgaa  >  1:618281‑M1/1‑7 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   
AAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAG  >  NC_000913/4497931‑4498424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.