mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 246 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,429,160 | 0 | C | G | 58.2% | 69.7 / 109.8 | 80 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,569 | 0 | A | T | 57.9% | ‑2.4 / 49.1 | 38 | F106Y (TTT→TAT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,597 | 0 | C | A | 57.8% | ‑2.2 / 52.1 | 45 | V97F (GTT→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,171 | 0 | A | G | 57.1% | 36.9 / 98.0 | 77 | E41E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,676 | 0 | A | G | 56.9% | 1.8 / 61.3 | 51 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,164 | 0 | C | G | 56.4% | 43.1 / 108.4 | 78 | A39G (GCC→GGC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,111 | 0 | A | C | 56.2% | 41.0 / 65.5 | 65 | T21T (ACA→ACC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,578 | 0 | T | C | 56.1% | ‑2.1 / 48.8 | 41 | E103G (GAA→GGA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,072 | 0 | A | C | 55.4% | 12.3 / 61.2 | 56 | V8V (GTA→GTC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,126 | 0 | A | C | 55.1% | 8.4 / 87.6 | 69 | A26A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,207 | 0 | T | G | 55.0% | 37.3 / 95.3 | 80 | V53V (GTT→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,482 | 0 | T | C | 55.0% | 0.2 / 22.8 | 20 | N135S (AAC→AGC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,484 | 0 | G | T | 55.0% | ‑1.0 / 18.5 | 20 | N134K (AAC→AAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,571 | 0 | C | T | 55.0% | ‑0.3 / 44.6 | 40 | E105E (GAG→GAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,658 | 0 | A | G | 54.7% | 6.2 / 69.7 | 53 | V76V (GTT→GTC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,114 | 0 | C | T | 54.4% | 25.5 / 89.3 | 68 | I22I (ATC→ATT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,128 | 0 | A | G | 54.4% | 23.6 / 81.7 | 69 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,661 | 0 | C | G | 53.8% | 11.4 / 89.0 | 53 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,204 | 0 | C | T | 53.2% | 17.9 / 102.7 | 80 | D52D (GAC→GAT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,699 | 0 | A | C | 52.3% | 8.1 / 52.1 | 44 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |