mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 201 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,671 | 0 | T | C | 56.8% | 14.5 / 59.0 | 44 | intergenic (‑77/‑209) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,811 | 0 | C | T | 53.8% | ‑3.4 / 54.8 | 40 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,111 | 0 | A | C | 53.8% | 14.9 / 69.0 | 52 | T21T (ACA→ACC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,651 | 0 | C | T | 53.3% | 6.8 / 60.6 | 45 | intergenic (‑57/‑229) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 580,020 | 0 | G | A | 53.1% | ‑6.4 / 71.6 | 49 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 579,717 | 0 | A | C | 51.2% | 1.7 / 57.7 | 41 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,072 | 0 | A | C | 51.1% | 4.2 / 56.8 | 45 | V8V (GTA→GTC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,114 | 0 | C | T | 50.9% | 9.1 / 67.5 | 53 | I22I (ATC→ATT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,702 | 0 | A | C | 50.9% | ‑5.1 / 162.1 | 110 | A218A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,385 | 0 | A | G | 50.0% | ‑0.4 / 38.7 | 29 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,069 | 0 | T | A | 50.0% | 1.4 / 60.9 | 45 | G7G (GGT→GGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,126 | 0 | A | C | 50.0% | 1.9 / 83.9 | 56 | A26A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,128 | 0 | A | G | 50.0% | ‑0.8 / 78.9 | 56 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,708 | 0 | A | G | 49.1% | ‑5.2 / 167.6 | 113 | T220T (ACA→ACG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,714 | 0 | A | C | 48.2% | ‑2.1 / 167.2 | 114 | A222A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 578,574 | 0 | A | C | 48.1% | ‑2.5 / 80.0 | 55 | intergenic (+6/+26) | rzpD/borD | putative prophage endopeptidase RzpD/prophage lipoprotein BorD |
| * | NC_000913 | 1,429,692 | 0 | T | A | 48.1% | 10.4 / 171.3 | 109 | L215Q (CTA→CAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,204 | 0 | C | T | 47.6% | 5.1 / 79.7 | 66 | D52D (GAC→GAT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,682 | 0 | T | G | 47.6% | 14.7 / 134.9 | 105 | S212A (TCA→GCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 578,571 | 0 | C | T | 47.3% | 10.4 / 76.7 | 55 | intergenic (+3/+29) | rzpD/borD | putative prophage endopeptidase RzpD/prophage lipoprotein BorD |