Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,429,0690TA50.0% 1.4 / 60.9 45G7G (GGT→GGA) stfRputative prophage side tail fiber protein StfR
Reads supporting (aligned to +/- strand):  ref base T (9/13);  new base A (14/8);  total (23/22)
Fisher's exact test for biased strand distribution p-value = 2.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

CCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTG  >  NC_000913/1428840‑1429306
                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                             
ccaaaGCAACACGTCTCTGGCGTGGGGAGTTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATAGTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGa                                                                                                                                                                                                                          <  1:326763/247‑1 (MQ=255)
   caGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGaaaa                                                                                                                                                                                                                       <  1:468195/251‑1 (MQ=255)
                  ggtgTGGGAAGCTGGGGTGCAGTTTAACCCGACCGAACCCGGTGCCATTGATATTGCTGATGAAGGCCCCGTCAGTGGCGACTGGCGCATTGACGGTTTCATCGTGGGTGTCGGTGAT‑AAGTTCTGATTAGCCAGGTAACACAGGGTTGTGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACt                                                                                                                                                                                                          <  2:212339/246‑1 (MQ=255)
                     gTGGGGAGCTGGCGTGCAGTTTAACCCGAACGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACCGGAAAACCGGGACAGAACTGcac                                                                                                                                                                                                      >  2:425325/1‑250 (MQ=255)
                              tGGCGTGCCGTTTCACCCGACCGAATCCGTGGACATTGATATTGCTTATGAAGTCCCCGGCCGTGGCGACTGGCGCACTGACGGTTTAATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTTTGACAGCCCGCCGGGTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGGAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCt                                                                                                                                                                                             <  2:240301/250‑1 (MQ=255)
                                           aaCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGAGGGGTGAATATGGCAGAAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAACCCGGGACAGAACTGCACACTCCAGCTGAAAGCacaaact                                                                                                                                                                                >  2:84012/1‑244 (MQ=255)
                                                gaccgaATACGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCCCTGCCGGTTTCTTCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGAAGAAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAACACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGc                                                                                                                                                                          >  2:372804/1‑251 (MQ=255)
                                                      aTCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACg                                                                                                                                                                    >  2:158547/1‑251 (MQ=255)
                                                          gtcgttgttGATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACggtgg                                                                                                                                                                >  1:440190/8‑251 (MQ=255)
                                                          gTGGCCCTTGATATTGCTTATGAAGGCCCTGGCAGGGGCGAGTGGCGCCTTGACGGTTTATTCGTGGGTGTCG‑TTATTAAGTTCTGATTAGCCAGGTAACAGAGTGTTTTGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTGCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATCCAGCTTAAAGCAAAACTTAACAGCACCACggtgg                                                                                                                                                                <  2:218611/251‑1 (MQ=255)
                                                            cgttgttGATATTGCTTATGAAGGCGCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGGCGTAACAGCACCACggtggt                                                                                                                                                               <  2:75240/245‑1 (MQ=255)
                                                              ccATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACggtggtggt                                                                                                                                                            <  1:87927/251‑1 (MQ=255)
                                                                 ttGATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGa                                                                                                                                                          <  1:279030/250‑1 (MQ=255)
                                                                               gAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTc                                                                                                                                             >  2:130525/1‑249 (MQ=255)
                                                                                aaGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAgg                                                                                                                                          >  2:146274/1‑250 (MQ=255)
                                                                                 aGGCCCCGGCAGTGGCGCCTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGaa                                                                                                                                         <  1:374511/251‑1 (MQ=255)
                                                                                  ggctccGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGaga                                                                                                                                        <  1:129823/247‑3 (MQ=255)
                                                                                                     ggtgcgctgccGGTTTCATTGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCggg                                                                                                                       <  2:386607/239‑1 (MQ=255)
                                                                                                        gtactaaCGGCTTCCTCGTTGGAGTCGGTTAT‑CAATTCTCATTAGCCAGCACACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTACAGATTTCAGGAGTCCTGACAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGCAAGACAGACGTAACAGCACCACGGAGGTGGTGACCACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGtt                                                                                                                   >  2:192610/7‑250 (MQ=255)
                                                                                                          aCTGACGGATTCATCGTTGGGGTCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTAc                                                                                                                 >  1:124689/1‑250 (MQ=255)
                                                                                                              acggattcatcgttgggggaggTTAT‑AAATGCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTGTTGTTTGGGGGGAATATGGCAGTAAAGATTTCAGGAGTCCGGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTATCAGCACCACGGTGGTGGGGAACAGGGTGGGCTCATAGAATCCGTAGGAAGTCGGGCGTTACAGCAt                                                                                                            <  2:406717/231‑1 (MQ=255)
                                                                                                                 gTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGGGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCGGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGTCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGa                                                                                                         <  1:393765/251‑1 (MQ=255)
                                                                                                                   ttCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACg                                                                                                       >  1:102782/1‑251 (MQ=255)
                                                                                                                          ttggggtCGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGt                                                                                                 >  1:424676/6‑250 (MQ=255)
                                                                                                                           tggggtaggTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACCGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAACGACGGCACCGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCCGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGACGCCGGGCGTTACAGCATggttgtggcgtac                                                                                               >  2:182395/8‑240 (MQ=255)
                                                                                                                                 cGGTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCa                                                                                          <  2:6745/250‑1 (MQ=255)
                                                                                                                                   gTTAT‑AAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGt                                                                                        >  1:209510/1‑250 (MQ=255)
                                                                                                                                         aaGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTGCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGGAACAGCACCACGGGGGGGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGTCGTTACAGCATGGATGTTGAGTACTGTCAGTTCAGCg                                                                                  <  2:210163/251‑1 (MQ=255)
                                                                                                                                          aattCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGGAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGat                                                                                                        >  1:98805/3‑227 (MQ=255)
                                                                                                                                          aattCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGGAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGat                                                                                                        <  2:98805/226‑2 (MQ=255)
                                                                                                                                               tGATTAGCCAGGTAACATAGTGTTAAGACAGGCCGCCGGTTCAGGGAGGCCTTTTTGTGGGGTGAATATGGCAGCAAAGATTTCAGGTGTACTGAAAGACGGCACCGGAAAACCGGTACAGCACTGCACACTCCAGCTGAAAGCAAACCGTAACAGCACCCAGGTGGGGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCAGGCAGTGCAGAATGGAAGTTGAGTACGGTCAGTACCGCGTTATTc                                                                            >  2:293170/1‑251 (MQ=255)
                                                                                                                                                gATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTc                                                                            >  1:4102/1‑250 (MQ=255)
                                                                                                                                                gATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTc                                                                            <  2:4102/250‑1 (MQ=255)
                                                                                                                                                gATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgacatcct                                                                           <  1:121974/251‑10 (MQ=255)
                                                                                                                                                 aTTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcctg                                                                          >  1:317464/1‑241 (MQ=255)
                                                                                                                                                      ccAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGGGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATATGGAGTACGGTCAGTACAgtgtcatcctgcaggt                                                                     >  1:341575/1‑236 (MQ=255)
                                                                                                                                                                                         aGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCAtt                                   >  1:325183/1‑250 (MQ=255)
                                                                                                                                                                                          ggCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGTGTTACAGCATGGACTTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGTAAGGATTCCCGCCGTCACATGCCGGGACCATTAc                                 <  1:425325/251‑1 (MQ=255)
                                                                                                                                                                                              ggtttttgtGTGGGGGGAAAATGTCAGTAAAGATTTCAGGTGGACTGAAGGGCGGTACAGGAAAACCGGTACAGAACTGCACAATCCAGCGGAAAGCAAAACGTAACAGCCCCGTGGTGGGGGTAAACTCGCGGGCCTCAGAAAATCCGGATGAAGCCGGGCTTTCCGGCATGGTCGTTGAGTGCGTTCAGTCCAGCGTTATTTTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGTCCATTACCgtg                             <  2:289407/248‑1 (MQ=255)
                                                                                                                                                                                                  tttttGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGGTGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATg                         >  1:86619/1‑251 (MQ=255)
                                                                                                                                                                                                  ttttgggggggTGAATATGGAAGTAAAGATTTCAGGGGTCCGGAAGGACGGCACAGGAAAACCGGTCCAGAACTGCCCAACCCAGCTGAAAGAAAAACGTAACAGCACCGCGGGGGTGGTGAACCCGCTGGCCTCAGAAAATCCGGATGAAGCGGGGCGTTACGGCATGGACGTTGAGTCCGGTCATTAAAGCGTTTTTCTTTTGGTGGAGGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTAt                          <  2:111399/243‑1 (MQ=255)
                                                                                                                                                                                                    tttGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGa                        >  1:111536/1‑250 (MQ=255)
                                                                                                                                                                                                      tgaggggTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGa                        >  2:133227/4‑248 (MQ=255)
                                                                                                                                                                                                                     gCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTGCCACCATCGCACGCCGGGACCATCACCGTGGATGAAGATTCACAAccggggac      <  1:130525/251‑7 (MQ=255)
                                                                                                                                                                                                                          aaaGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTg  >  1:434348/1‑250 (MQ=255)
                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                             
CCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTAT‑AAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTG  >  NC_000913/1428840‑1429306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑