| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 295,738 | IS2 (–) +5 bp | coding (1355‑1359/1401 nt) | intF ← | putative phage integrase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 295738 = | 1 (0.030) | 47 (1.160) | 44/496 | 0.1 | 97.9% | coding (1359/1401 nt) | intF | putative phage integrase |
| ? | NC_000913 | 381260 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 295742 | 1 (0.030) | 42 (1.030) | 39/496 | 0.2 | 97.6% | coding (1355/1401 nt) | intF | putative phage integrase |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGG > NC_000913/382347‑382825 | ggAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCt < 1:188725/251‑1 (MQ=31) aGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCa < 1:94849/251‑1 (MQ=255) cAGAGAGCTTCGTGAAAACGCTAAAGCATGACTCCATCAGTATCAAGCCCAAACCAGACGGGTTACCGGCAGCACAGAACCTTGCAGAGGCGCTCCAGCATTATAACGAATGGCATCAGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATCTCTGCGGCAGCAGGCTTGTAATGGGTTAAGTGCTACCAGATGTCTCGAAATATAGGGGCAAATCCACTTACCTATCAGGCAGTTTGCGCCAATCACt > 2:213906/1‑251 (MQ=14) aaaaCGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAAt > 1:216068/1‑251 (MQ=255) aCGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACATATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGACTAAc > 1:321169/1‑251 (MQ=255) gATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAACGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACgg < 1:10271/251‑1 (MQ=255) gACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCTGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAAGGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAGATCTGCGGCAGCGGGCTTGTAATTGGTTAAGTGAGAACAGATGTCTGGAAATATAAGGGCAAATCCAATGACCGATCAGGCAGTTTGCGCCAATCGCTACCGGACCCTGAATAACGGCCCCATgcca < 2:446937/251‑4 (MQ=14) gACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCCGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCAGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCAcc > 1:423895/1‑245 (MQ=255) gACTACATAAGTATCATGCCCAAACCAGACGTGTTAACGGAAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTTCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTGTGCGCCAATCACTACCGGACCCTGAATAACGGCAcc < 2:423895/245‑1 (MQ=255) gggatAACGGCTGCCAAGCACCTGGCAGAGGCGCTCGAGCGTTATAACGAATGGCATCCGCAAAGTGCGCTGGGATATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGCAACGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGCTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCACGACAAATACGGGTATTCGCGCCGATAACAAATTc > 2:70701/5‑251 (MQ=18) aaCGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCAGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTg > 1:420706/1‑251 (MQ=255) gcaAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGGTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTtc < 1:139361/251‑1 (MQ=255) aaCCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTGTCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCaat > 1:227923/1‑251 (MQ=255) ttcAGAGGCGTGCGATCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCGCGCCACGGGAATGTTTGCGGCAGCGGGCTTGTTATGGTTTAAGTGTTATCAGATGTCGGTAACGATAGGGGCAAATCCAATTCCCTTTCATGCAGTTTGCTCCAAGCACTCCCGGCCCCTGAATACCGGCACTATTACAAATTCGGTTATTCGGGCCGATAACAACTTCACCTGCAGGTTCATCattaa < 2:356346/246‑1 (MQ=12) tGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGTGTATGCGCGCCGATAACAACTTCACCTGCAGTTTCATCaataat < 1:250370/249‑1 (MQ=255) agagGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCt > 1:7243/1‑251 (MQ=255) agGCGTTCGAGCATTATACCGAATGGCATCCGCAGAGTGCGCGGGGTTATCTCTCGCCACGGGAATATCTGCGGCAGAGGGCTTGTAATGGGTTAAGTGATAACAGATGTCGGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTgg < 2:407110/251‑1 (MQ=255) cgtgcGAGCATTATAACGAATGGCAGCCGCAGAGTGCGCTGGGTTAGCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTCCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATTCTGGTATTCGCGGCGATAACAACTTCACCTGCAGTTTCAGCTATAATTACCTGGTCt < 2:228063/247‑1 (MQ=21) cGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCATTTTCATCAATAATTACCTGGTCt < 1:104236/251‑1 (MQ=255) cGAGCATGATAACGAAGGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCATGGGAATATCTGCGGCAGCGGGCTTTTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCATATCCAATTACCTATCAGGCGGTTTGCGCCAATTACTACCGGATCTTGAATAACGGCACCGTGATAAATACGGGTATTCGCGCCGATAACATCTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCa < 1:432369/250‑1 (MQ=21) ataACGAATAGCATAAGCAAAGTGCGCTGGGATATCGCTCGCCACGGGAATCTCTGCGGCAGCGGGCTTGTAATGGGTTCAGTGATAACAGATGTCTGGACATATAGGTGCAAATCCAATTACCTATCAGGAAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACAATGACAAATACGGGGATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAGTAGTTACCTGGTCTGCAATCTGact > 2:392703/1‑248 (MQ=255) gAATGGCATCCGCATAGTGCTCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATAttttt < 1:42897/251‑1 (MQ=255) aaTGGCATCCGCATAGTGCGCCGAGATATCGCTCGCAACGGCAATATCTGCGCAAGCGGGCTTGCAATGCGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTtc > 2:218319/1‑251 (MQ=38) aGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGGCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTGGCGCCAATCACTACCGGACCCTTAAGAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTaa < 1:390975/250‑1 (MQ=255) tGCGCTGGGATATCGATCGCCACGGGAATATCTGCGGCAGCGGGCTTGGAATAGGGTAAGTGCTACCAGATGTCTGGAAATATAGGGGCAAATCCAATTACATATCAGGCAGTTTGAGCCAATCAATACCGGACCCTGAATAACGGCACCATGACAAATACGGGAATTCGCGCCGATAACAACTTCACCTGCACATTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCt > 2:154999/1‑251 (MQ=37) gcgcTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCtt < 1:353159/251‑1 (MQ=255) gcgcTGGGTTATCGCTCGCCACGGGAATATCTGAGGCACCGCGCTTGTAATGGGTTAAGTGATAAAAGATGCCTGGAAATATAGGCGCAAACCCACTTACCTACCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAAAACGGGTATTCGCGCCCATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTACGCtt > 1:66129/1‑251 (MQ=37) gggTTATCGCTCGCCACGGGCATATCTGCGGAAGCGGTCTTGTAATGGGTTAAGGGCTAACAGATGTCTGGTCATATAGGGGCAAATCCAATTCCCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCCTGACAAATACGGGTAATGCCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCAGGTCTGTATACTGAATATTTTTCTCTTTAACATTAATCttacgat > 2:343261/1‑246 (MQ=255) gCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGaa < 1:455404/248‑1 (MQ=255) gCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTGTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAg < 1:213906/249‑1 (MQ=255) tGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCgg > 1:402348/1‑251 (MQ=255) ggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCATGTGACAGAAGGTTGGGAATAAGCGGTTGACGc > 1:161420/1‑251 (MQ=255) gTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGAAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGATTTTCAGTTCCTGTGACAGACGGTTGGGAATAAGCGGTTGACGCt > 2:135580/1‑251 (MQ=255) aGATGTCTGGAAATATACGGGCAAATCCCATTACCTAGCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACTGCACCATGACAAATACGGGTCTTCGCGCCGATAACACATTCTCCTGCAGTTTCATCAATAATTTCCTGGTCTGCAATCTGAATATTTTTCTCTTGACCAGGGATCGTCAGATAGTTTTTCAGTGCCTGTGACAGAAGGTTTGGAATAAGCGGATGACGCTGCCCCCATTGCgg < 2:152539/251‑1 (MQ=255) tatCTGGAAATATAGGGGCAACTCCAATTACCTCTCAGGCAGTTTGAGCCAATCACTACCAGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATCATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTAGACGCTTCCACCAGTGCGGAAt > 2:75087/3‑251 (MQ=255) ggcTGGAAATATAGGGGCAAATCCAATTCCCTATCAGGCCGTTTTCGCCAATCACTACCGGACCCTGAATAACTGCACCATGACAAATACGGTTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACCGAAGGTTGGGAATAAGCGGTTGACGCTGCCACCAGTGCGGAAt < 1:100713/248‑1 (MQ=255) tataGGGGCAAATCCTATTACCTCTCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCCCCTGCAGTTTCATCAATAATTACCTGGACTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCgggtggg > 2:419403/1‑251 (MQ=255) | GGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGG > NC_000913/382347‑382825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |