New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 275508	0 (0.000)	29 (0.720)	27/466	0.4	100%	coding (184/1404 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_000913	372749 =	0 (0.000)					coding (635/810 nt)	mhpD	2‑hydroxypentadienoate hydratase

TGTTAACAAACGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGTTATGCAGTGTCTGGGCGAGCTGTCGGTCGCGATGCCGGAGACCGGAGCGTTTCACGTTTATGCCGCGCGCTATCTTGGTCCGGCTACCGGGTATACCGTGGCCTGGCTTTACTGGCTGACCTGGACCGTGGCGCTGGGTTCGAGCTTTACCGCCGCTGGATTCTGTATGCAGTACTGGTTTCCACAGGTGCCGGTATGGGTCTGGTGCGTGGTGTTCTGCGCGATTATTTTTGG  >  NC_000913/275259‑275743                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            tGTTAACAAACGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGATATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGGACGCTGGTGGCCTATCTGATTGGTGCGGTGGTGGTgtgggtggg                                                                                                                                                                                                                                            >  1:416535/1‑250 (MQ=255)         aaCGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGTAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTTATTGGGGCGCTGGGGGGctggctgggccgcaaa                                                                                                                                                                                                                                     >  1:266030/1‑242 (MQ=255)         aaCGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaa                                                                                                                                                                                                                                    <  2:10865‑M1/251‑10 (MQ=255)                 ataACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGACTATTTTATTGGTGCGGTGGGGGGCTGGGTGGcacgcaaaaagggcagg                                                                                                                                                                                                                            >  1:418853‑M1/1‑234 (MQ=255)                      aaaCCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAAAGCTGCTGGCCCATCTTATTTGTGCGCTGGGGGTCTGGCTGGcccgcaaaaatgcccgtctggg                                                                                                                                                                                                                       >  1:265994‑M1/1‑229 (MQ=255)                        aCCTTCTATGGATGTTTCGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGGACGCTGACGGCCTATTTGACTTTTGCGCCGGTGGGCTGGGTGGcacgcgaaaaggccactctcggtg                                                                                                                                                                                                                     >  2:125381‑M1/1‑227 (MQ=255)                                          gATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGAGTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgctcaccggag                                                                                                                                                                                                   <  2:222975‑M1/251‑43 (MQ=255)                                                        tAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttac                                                                                                                                                                                      <  2:310149‑M1/250‑56 (MQ=255)                                                           aaGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGGGCTGGGGGTCTGGCTGGcccgcaaaatggccagtctgggtggaccgctgcgcaccggggatatcatttttaaccgg                                                                                                                                                                                  >  1:413101‑M1/1‑192 (MQ=255)                                                                          ccacacaacaaaATGCTCCACTTAAGCGCACAATGAACACGCGGCACCTGATTATGCTTTCCTTGGGCTGCGTGATTGGCACAGGAGTATTCTTCAATACCGGGTACATCATTTCCACCCCGGTAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatg                                                                                                                                                                   <  2:416535‑M1/249‑75 (MQ=255)                                                                                        gcgcCACTGAAGCGCACAATGAAAACGCTTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTGCAAGACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCGGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgc                                                                                                                                                     <  2:154829‑M1/251‑89 (MQ=255)                                                                                         cgcCACTGAAGCGCACAATGAAAACGCGTCACCTGATTTTGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCTCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcg                                                                                                                                                    <  1:206650‑M1/251‑90 (MQ=255)                                                                                          gcCACTGAAGCGCACAATGAAAACTCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCGGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttgccggggcattaggtccgatggtggcggtgaatgcgg                                                                                                                                                   <  2:390182‑M1/251‑91 (MQ=255)                                                                                                gAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTTGTCTGGCTGGcacgcaaaatggccaggctgggtgaaccgctgcgcaccgtagatatcattcttacctgggcattaggtccgatggtggcggtgaatgcgggcgatc                                                                                                                                             <  1:164123‑M1/251‑97 (MQ=255)                                                                                                   gcgcACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGTGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCGCTGGAGCGGCGGGAACTCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGctcgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtcctatggtggcggtgaatgctggggatcgtt                                                                                                                                          <  2:31093‑M1/251‑100 (MQ=255)                                                                                                                           gATTATTCTTGCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgctccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcata                                                                                                                   <  2:346866‑M1/250‑123 (MQ=255)                                                                                                                                    ttCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagtt                                                                                                          <  2:96769‑M1/250‑132 (MQ=255)                                                                                                                                      ccTTGGGCGGCGTGATGGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaatcccatattgaaggcataggttcagttgct                                                                                                       <  2:413101‑M1/251‑135 (MQ=255)                                                                                                                                                                         aaTACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtct                                                                    <  1:243630‑M1/251‑170 (MQ=255)                                                                                                                                                                               gggTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcg                                                                                                                                                <  2:12910‑M1/169‑94 (MQ=255)                                                                                                                                                                                               ccacTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcg                                              <  1:377232‑M1/251‑192 (MQ=255)                                                                                                                                                                                               ccacGGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcg                                              <  1:133910‑M1/251‑192 (MQ=255)                                                                                                                                                                                                           cggGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggggaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggtt                                  >  2:123800‑M1/1‑48 (MQ=255)                                                                                                                                                                                                           cggGAACGCTGCCGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGAcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgctggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgccattttcaagcgcagcccccaaaagaaggctgtcaatagtaagcgtaaagtcgcccttttcggtt                                  >  2:170752‑M1/1‑48 (MQ=255)                                                                                                                                                                                                              gAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcatatgttcagttgctgcgacattttcaagcgcagccccaaaatgaagtctgtcatgggtaagcgtaaagtcgccattatcggttctg                               <  2:266030‑M1/251‑207 (MQ=255)                                                                                                                                                                                                                aCGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggc                             >  1:83057‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                      atggCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggggaatgcaggcgagcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcttaaggtcgccattatcggttctggcaacatt                       <  1:233157‑M1/250‑215 (MQ=255)                                                                                                                                                                                                                                 gATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggcaacattggtaccga               <  1:110587‑M1/248‑223 (MQ=255)                                                                                                                                                                                                                                     ggTGCGCGGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattctgaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgtgttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagacgcgattatcggttctggcaacattggtaccgatctgat         <  2:126937‑M1/250‑229 (MQ=255)                                                                                                                                                                                                                                        gcgcTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatagcattcttgccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatagtgaaggcataggttcagttgcggcgacattttcaagcgcagccccaaaagggagtctgtcatgagtaagcgtaaattcgccattatcggttctggcaacattggtaccgatctgatgatt     <  1:423559‑M1/251‑233 (MQ=255)                                                                                                                                                                                                                                            tggtggTCAGGCTGGcacgcaaaatggccagtctgggtgaaccgcggcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggaataggttcagttgctgggaacttttcaagcgcagccccaaaagaaagtctgtcatgagtaagcgtaaagtagccattatcggttctggcaacattggtaccgatctgatgattata  >  2:141289‑M1/1‑15 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            TGTTAACAAACGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGTTATGCAGTGTCTGGGCGAGCTGTCGGTCGCGATGCCGGAGACCGGAGCGTTTCACGTTTATGCCGCGCGCTATCTTGGTCCGGCTACCGGGTATACCGTGGCCTGGCTTTACTGGCTGACCTGGACCGTGGCGCTGGGTTCGAGCTTTACCGCCGCTGGATTCTGTATGCAGTACTGGTTTCCACAGGTGCCGGTATGGGTCTGGTGCGTGGTGTTCTGCGCGATTATTTTTGG  >  NC_000913/275259‑275743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.