New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 417138	2 (0.060)	23 (0.780) +CATAGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCC	23/408	0.3	96.5%	intergenic (‑186/‑4)	sbcD/phoB	ATP‑dependent structure‑specific DNA nuclease ‑ SbcD subunit/DNA‑binding transcriptional dual regulator PhoB
	?	NC_000913	419182 =	0 (0.000)					coding (1294/1296 nt)	phoR	sensor histidine kinase PhoR

CGAATTTAGCGTTGAAGATAACGGACCGGGCATTGCACCGGAGCATATTCCGCGCCTGACCGAGCGTTTTTATCGCGTTGATAAAGCGCGTTCCCGGCAAACCGGCGGTAGCGGATTAGGGTTAGCGATCGTGAAACATGCTGTGAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTTTTAGATCCCTCCTTGCTTTAAAACGTTATAAGCGTTTAAATTGCG  >  NC_000913/418938‑419416                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                           tgaggtgtgaaggatgcgcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCg                                                                                                                                                                                                                                      >  1:263073‑M2/245‑251 (MQ=255)  gaggtgtgaaggatgcgcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGc                                                                                                                                                                                                                                     >  1:174028‑M2/244‑251 (MQ=255)                   cataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTAtt                                                                                                                                                                                                                    <  1:109252‑M2/25‑1 (MQ=255)                      aacggatccctggcgaaaaagcctgggcgcgattataccccaactcatgtgccatttgattttttctgcgccacggaaatcaataacctgaacatatgtgagacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGcc                                                                                                                                                                                                                 >  1:108205‑M2/224‑251 (MQ=255)                           gttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacaggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAg                                                                                                                                                                                                            <  1:46829‑M2/33‑1 (MQ=255)                                        aagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTg                                                                                                                                                                                               <  1:297475‑M2/46‑1 (MQ=255)                                            atgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattactgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCtt                                                                                                                                                                                           >  2:207063‑M2/202‑251 (MQ=255)                                                gcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAAGCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTAttt                                                                                                                                                                                       <  1:305281‑M2/54‑1 (MQ=255)                                                                      gtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGc                                                                                                                                                                 <  1:182310‑M2/76‑1 (MQ=255)                                                                                                   aatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAttttt                                                                                                                                    <  2:769‑M2/105‑1 (MQ=255)                                                                                                                        tgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGt                                                                                                               >  1:96193‑M2/126‑251 (MQ=255)                                                                                                                               agcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTc                                                                                                        <  1:310311‑M2/133‑1 (MQ=255)                                                                                                                                         aaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatgtattacaacagggcatcataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTTCAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCTCGGAAATa                                                                                               <  2:41814‑M2/142‑1 (MQ=255)                                                                                                                                                    aaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctataactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAGTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATAc                                                                                    <  2:174028‑M2/153‑1 (MQ=255)                                                                                                                                                     aatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTTCAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACtg                                                                                  <  2:90032‑M2/155‑1 (MQ=255)                                                                                                                                                          gacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacatatgttgcggccgctctagaactagttgatcccccTAATCCGCCTTTGTCATCTTTTATTGCTATAAGCGAGGCGATGCTGTCTTAGTTTGTGTACAGTCTAAATACGTGCGTTAGATTTTACAACGAGTGGTGATTATTTGTTCTCATGATTAGCCTTGTCGTTTTCACGGAAATAGTGTTTTATACtggttgg                                                                             <  1:165091‑M2/160‑1 (MQ=255)                                                                                                                                                          gacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGACTTTTTCACGGAAATAGTGTTTTATACtggttg                                                                              <  2:135426‑M2/159‑1 (MQ=255)                                                                                                                                                             gcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGa                                                                          <  2:192123‑M2/163‑1 (MQ=255)                                                                                                                                                                 aatgacgtcgcattaatgaacgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTc                                                                      <  2:263073‑M2/167‑1 (MQ=255)                                                                                                                                                                    gacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCtt                                                                    >  2:79120‑M2/82‑250 (MQ=255)                                                                                                                                                                                      gcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTTTTATCGCTATATACCTCTGGt                                                 <  1:82285‑M2/188‑1 (MQ=255)                                                                                                                                                                                        aacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGttt                                               >  2:272020‑M2/62‑251 (MQ=255)                                                                                                                                                                                                    acaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTTTTAGATCcctcc                                   <  1:254075‑M2/202‑1 (MQ=255)                                                                                                                                                                                                                             cgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACa                                                                                                                                                    >  1:301028‑M2/25‑113 (MQ=255)                                                                                                                                                                                                                             cgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACa                                                                                                                                                    <  2:301028‑M2/89‑1 (MQ=255)                                                                                                                                                                                                                                     aactagtggatcccccGAATCCGACTTTGTCCTCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGAGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAACCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTTTTAGATCACTCCTTGCTTTAAAACGTTATAAGCGTTTCAATTgcg  >  2:24589‑M2/17‑251 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                           CGAATTTAGCGTTGAAGATAACGGACCGGGCATTGCACCGGAGCATATTCCGCGCCTGACCGAGCGTTTTTATCGCGTTGATAAAGCGCGTTCCCGGCAAACCGGCGGTAGCGGATTAGGGTTAGCGATCGTGAAACATGCTGTGAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTTTTAGATCCCTCCTTGCTTTAAAACGTTATAAGCGTTTAAATTGCG  >  NC_000913/418938‑419416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.