New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 417138	2 (0.060)	23 (0.780) +CATAGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCC	23/408	0.3	96.5%	intergenic (‑186/‑4)	sbcD/phoB	ATP‑dependent structure‑specific DNA nuclease ‑ SbcD subunit/DNA‑binding transcriptional dual regulator PhoB
	?	NC_000913	419182 =	0 (0.000)					coding (1294/1296 nt)	phoR	sensor histidine kinase PhoR

TCGCGGCTTTTACTGTAGAAGTTCTGGCCGAGATGCCAGTCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAATGGCTTTCAGCCGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGT  >  NC_000913/416891‑417377                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                tCGCGGCTTTTACTGTAGAAGGTCTGGCCGAGATGCCAGTCTGAGGTGTGAAGGATGCGCAGAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAca                                                                                                                                                                                                                                               <  1:173266‑M1/250‑3 (MQ=255)                          ggCCGAGATGCCAGTCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATTACGTCGCATTAATGATCGCAACCTATTTAGTACAACAGGGCAAcataggtggcggccgctctagaactag                                                                                                                                                                                                                      <  1:344932‑M1/250‑28 (MQ=255)                                          tGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccg                                                                                                                                                                                                     >  1:263073‑M1/1‑207 (MQ=255)                                           gAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgc                                                                                                                                                                                                    >  1:174028‑M1/1‑206 (MQ=255)                                                            cATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttatt                                                                                                                                                                                   <  1:109252‑M1/251‑63 (MQ=255)                                                               aaCGGATCCCTGGCGAAAAAGCCTGGGCGCGATTATACCCCAACTCATGTGCCATTTGATTTTTTCTGCGCCACGGAAATCAATAACCTGAACATATGTGAGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgcc                                                                                                                                                                                >  1:108205‑M1/1‑186 (MQ=255)                                                                   gTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACA‑GGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataag                                                                                                                                                                           <  1:46829‑M1/251‑71 (MQ=255)                                                                                 aaGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctg                                                                                                                                                              <  1:297475‑M1/251‑84 (MQ=255)                                                                                     aTGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTACTGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggctt                                                                                                                                                          >  2:207063‑M1/1‑164 (MQ=255)                                                                                         gcgcGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaagccgcctttgtcatcttttattgccataagccagtcgatgctggcttattt                                                                                                                                                      <  1:305281‑M1/251‑92 (MQ=255)                                                                                                               gtgCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggc                                                                                                                                <  1:182310‑M1/251‑114 (MQ=255)                                                                                                                                            aaTCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttt                                                                                                   <  2:769‑M1/251‑143 (MQ=255)                                                                                                                                                                 tgCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgt                                                                              >  1:96193‑M1/1‑88 (MQ=255)                                                                                                                                                                        aGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttc                                                                       <  1:310311‑M1/251‑171 (MQ=255)                                                                                                                                                                                  aaatctgtcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATGTATTACAACAGGGCATcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagatttttcaacgattggtgattttttgttcgcatgattagccatgtctttttctcggaaata                                                              <  2:41814‑M1/250‑180 (MQ=255)                                                                                                                                                                                   aatctgtcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATg                                                                                                                                                                                           <  1:53046/124‑1 (MQ=255)                                                                                                                                                                                   aatctgtcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATg                                                                                                                                                                                           >  2:53046/1‑124 (MQ=255)                                                                                                                                                                                             aaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctataactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgagtttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatac                                                   <  2:174028‑M1/250‑191 (MQ=255)                                                                                                                                                                                              aatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagatttttcaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactg                                                 <  2:90032‑M1/251‑193 (MQ=255)                                                                                                                                                                                                   gACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcatatgttgcggccgctctagaactagttgatccccctaatccgcctttgtcatcttttattgctataagcgaggcgatgctgtcttagtttgtgtacagtctaaatacgtgcgttagattttacaacgagtggtgattatttgttctcatgattagccttgtcgttttcacggaaatagtgttttatactggttgg                                            <  1:165091‑M1/251‑198 (MQ=255)                                                                                                                                                                                                   gACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgactttttcacggaaatagtgttttatactggttg                                             <  2:135426‑M1/250‑197 (MQ=255)                                                                                                                                                                                                      gCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtga                                         <  2:192123‑M1/251‑201 (MQ=255)                                                                                                                                                                                                          aaTGACGTCGCATTAATGAACGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgatttc                                     <  2:263073‑M1/251‑205 (MQ=255)                                                                                                                                                                                                             gACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgatttctt                                   >  2:79120‑M1/1‑44 (MQ=255)                                                                                                                                                                                                                               gCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgattttttatcgctatatacctctggt                <  1:82285‑M1/251‑226 (MQ=255)                                                                                                                                                                                                                                 aaCCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgatttcttatcgctatatacctctggttt              >  2:272020‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                                             acaacaGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgatttcttatcgctatatacctctggtttttagatccctcc  <  1:254075‑M1/251‑240 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                TCGCGGCTTTTACTGTAGAAGTTCTGGCCGAGATGCCAGTCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAATGGCTTTCAGCCGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGT  >  NC_000913/416891‑417377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.