New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 364355	0 (0.000)	9 (0.310) +CGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATT	8/400	1.3	73.1%	coding (1951/3075 nt)	lacZ	beta‑galactosidase
	?	NC_000913	= 4171921	8 (0.230)					intergenic (+165/‑136)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

GAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATG  >  NC_000913/4171687‑4172162                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                  gaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCccgccataaactgccaggaattaattccccaggc                                                                                                                                                                                                                                   <  1:252594‑M1/189‑17 (MQ=255)                                          aaactgccaggaattaattcccccggcatcaaataaaacgaaaggctcagTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGGGGGGTGCGGGCAGGACGCCCGCCATAAACTGGCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagcatgggccttt                                                                                                                                                                                          <  2:203711‑M2/227‑58 (MQ=255)                                                                          aTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctct                                                                                                                                                          <  1:132894‑M2/251‑90 (MQ=255)                                                                              aaCGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGATGGTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCcac                                                                                                                                                       >  1:316680/1‑250 (MQ=255)                                                                                  aaaGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagt                                                                                                                                                  <  1:277013‑M2/251‑98 (MQ=255)                                                                                            tCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACt                                                                                                                                         >  2:2258/1‑250 (MQ=255)                                                                                               aaaGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtc                                                                                                                                     <  1:110094‑M2/251‑111 (MQ=255)                                                                                               aaaGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtc                                                                                                                                     <  1:198922‑M2/251‑111 (MQ=255)                                                                                                              cGTTTTATCTGATGTTTGTCGGAGAACGCTCTCCTGAGTAGGACATATCCGCCGCGAGCGGCTTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCCTAACCTGCCAGGaattggggatcagaattctcctgtttgacagcttatcatcggagctcctgcactggatggtggagctggatagtaagccgctggcaagcggtgaagtgcctctggatttagatccacaaggtaa                                                                                                                       <  2:151112‑M2/250‑125 (MQ=255)                                                                                                                                          ctctCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGCAGAAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCCGGaattaattccccaggcat                                                                                                                                                                                                                                 <  2:227785‑M2/116‑19 (MQ=255)                                                                                                                                           tctcCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaaccaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtagggcaaatccgccggggggggatttgaacgttgcgaagcaacggcccggaggggcgg                                                                                         <  2:112157‑M2/251‑155 (MQ=255)                                                                                                                                             ccaggaggagaaaaaccccgcggggaggggatttgaacgtGGCGAAGCACCGGCCGGGGGGGTGGGGGGAGGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacagatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgg                                                                                       >  1:65217‑M2/18‑95 (MQ=255)                                                                                                                                               cTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCCGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCCGGAAAGCAGCTATGAACCACTCCTTAAAACCCTg                                                                                     >  2:301399/1‑251 (MQ=255)                                                                                                                                                            acccggcgggtgggaaTTTGACCGTGGCGAACAAACGGCCGGGGGGGTGGCGGCCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGc                                                                        <  1:361679/236‑1 (MQ=37)                                                                                                                                                                gccgGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataa                                                                     <  1:122056‑M2/250‑175 (MQ=255)                                                                                                                                                                           aTTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcac                                                           <  1:202029‑M2/249‑185 (MQ=255)                                                                                                                                                                                     tGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGACCGCCATAAACTGCCAGGaattacttccccaggcatcaaataaaccgaaaggctcagtcgaaagactgggcctttcgtt                                                                                                                                                                                      <  2:164915‑M2/116‑62 (MQ=255)                                                                                                                                                                                        gAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagcacgcgtagtgc                                             <  2:77181‑M2/250‑199 (MQ=255)                                                                                                                                                                                        gAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccccaggc                                            <  1:252594‑M2/251‑200 (MQ=255)                                                                                                                                                                                        aaaGCAACGGCCGGGAGGGTGGGGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTAt                                            <  1:175831/250‑1 (MQ=255)                                                                                                                                                                                                       aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGCCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGaa                              >  2:90079/1‑250 (MQ=255)                                                                                                                                                                                                                ggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTAc                    <  1:259901/251‑1 (MQ=255)                                                                                                                                                                                                                  cAGGACGCCCGCCATAAACTGCAAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTc                  >  1:101187/1‑251 (MQ=255)                                                                                                                                                                                                                   aGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcg                                                                              <  2:254904‑M2/190‑166 (MQ=255)                                                                                                                                                                                                                          ccgccATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagtacgcgtagtgcaaccgaacgcgaccgcatggtcagaagccgggcac          >  2:202029‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                                  aaCTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagtacgcgtagtgcaaccgaacgcgaccgcatggtcagaagccgggcacatcagcgc  <  2:71696‑M2/251‑242 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                  GAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATG  >  NC_000913/4171687‑4172162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.