| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 417,139 | 2043 bp→CATAGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCC | phoB–[phoR] | phoB, [phoR] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 417139 | 419181 | 2043 | 18 [0] | [0] 17 | phoB–[phoR] | phoB,[phoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 417138 | 0 (0.000) | 13 (0.380) +CATAGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCC |
13/406 | 1.1 | 100% | intergenic (‑186/‑4) | sbcD/phoB | ATP‑dependent structure‑specific DNA nuclease ‑ SbcD subunit/DNA‑binding transcriptional dual regulator PhoB |
| ? | NC_000913 | 419182 = | 0 (0.000) | coding (1294/1296 nt) | phoR | sensor histidine kinase PhoR | |||||
CGTTGAAGATAACGGACCGGGCATTGCACCGGAGCATATTCCGCGCCTGACCGAGCGTTTTTATCGCGTTGATAAAGCGCGTTCCCGGCAAACCGGCGGTAGCGGATTAGGGTTAGCGATCGTGAAACATGCTGTGAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTTTTAGATCCCTCCTTGCTTTAAAACGTTAT > NC_000913/418947‑419400 | aaggatgcgcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCa < 1:411624‑M2/16‑1 (MQ=255) ttatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTg > 2:118826‑M2/192‑251 (MQ=255) caataaccggaagatatgtgcgacgagcttttcataaagctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctattgattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGACATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAttgtttgt < 2:339360‑M2/108‑1 (MQ=255) cgacgagcttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCAGAAGCTAGTCGATGCTGGCTTATTTTCTGTGCAGTCAAAATACGGGCGTTAGATTTTACAACTATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCt < 1:187243‑M2/128‑1 (MQ=255) cttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTg > 2:299083‑M2/117‑129 (MQ=255) cttttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTg < 1:299083‑M2/13‑1 (MQ=255) ttcataaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACgg > 1:129377‑M2/114‑250 (MQ=255) aaatctgtcataaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTGGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAg < 1:241372‑M2/143‑1 (MQ=255) aaatctgacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACt > 2:5473‑M2/98‑251 (MQ=255) cattaatgatcgcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCtat > 1:274827‑M2/75‑251 (MQ=255) gcaacctatttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGt > 1:303582‑M2/64‑251 (MQ=255) ttattacaacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTATTAGAt < 1:118826‑M2/196‑1 (MQ=255) aacagggcaacataggtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCAGGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCTCTATATACCTCTGGTTTTTATATCCCTCCtt < 2:255353‑M2/204‑1 (MQ=255) cataggtggcggctgctctagaactagtggatcccccTAATCCACCTTTGTCATCTTTTATTGCCATAAGCCTGTCGATGCTGGCTAATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGAGTTTTTTACTGGATGGTGATTTCTTATCGATATATACCTCTGGTTTTTAGATCCCTCCTGGCTTTAAAAc > 2:106182‑M2/38‑251 (MQ=255) gtggcggccgctctagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTTTTAGATCCCTCCTTGCTTTAAAACGTtat < 1:155341‑M2/219‑1 (MQ=255) tagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAg > 2:140644‑M2/20‑162 (MQ=255) tagaactagtggatcccccTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAg < 1:140644‑M2/143‑1 (MQ=255) | CGTTGAAGATAACGGACCGGGCATTGCACCGGAGCATATTCCGCGCCTGACCGAGCGTTTTTATCGCGTTGATAAAGCGCGTTCCCGGCAAACCGGCGGTAGCGGATTAGGGTTAGCGATCGTGAAACATGCTGTGAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTATATACCTCTGGTTTTTAGATCCCTCCTTGCTTTAAAACGTTAT > NC_000913/418947‑419400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |