| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 417,139 | 2043 bp→CATAGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCC | phoB–[phoR] | phoB, [phoR] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 417139 | 419181 | 2043 | 18 [0] | [0] 17 | phoB–[phoR] | phoB,[phoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 417138 | 0 (0.000) | 13 (0.380) +CATAGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCC |
13/406 | 1.1 | 100% | intergenic (‑186/‑4) | sbcD/phoB | ATP‑dependent structure‑specific DNA nuclease ‑ SbcD subunit/DNA‑binding transcriptional dual regulator PhoB |
| ? | NC_000913 | 419182 = | 0 (0.000) | coding (1294/1296 nt) | phoR | sensor histidine kinase PhoR | |||||
GCGGCTTTTACTGTAGAAGTTCTGGCCGAGATGCCAGTCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAATGGCTTTCAGCCGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGG > NC_000913/416893‑417379 | gcgGCTTTTACTGTAGAAGTTCTGGCCGAGATGCCAGTCTGAGGTGTGACGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcat > 1:234582‑M1/1‑246 (MQ=255) cGAGATGCCAGGCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctct < 2:360334‑M1/239‑20 (MQ=255) cGAGATGACAGTCTGAGGTGTGAAGGATGCGCCTAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctct > 1:360334‑M1/1‑220 (MQ=255) gaTGCCAGTCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatcc < 1:47510‑M1/251‑35 (MQ=255) aTGCCAGTCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccc < 2:117585‑M1/251‑36 (MQ=255) aaGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtca < 1:411624‑M1/251‑54 (MQ=255) ttATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttg > 2:118826‑M1/1‑154 (MQ=255) cAATAACCGGAAGATATGTGCGACGAGCTTTTCATAAAGCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTGATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgacataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattgtttgt < 2:339360‑M1/251‑146 (MQ=255) cgacgaGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccagaagctagtcgatgctggcttattttctgtgcagtcaaaatacgggcgttagattttacaactattggtgattttttgttcgcatgattagccatgtct < 1:187243‑M1/251‑166 (MQ=255) cTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttg > 2:299083‑M1/1‑79 (MQ=255) cTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttg < 1:299083‑M1/129‑51 (MQ=255) ttCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacgg > 1:129377‑M1/1‑76 (MQ=255) aaatctgtcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttcttggcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatag < 1:241372‑M1/251‑181 (MQ=255) aaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatact > 2:5473‑M1/1‑60 (MQ=255) cATTAATGATCGCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgatttcttatcgctat > 1:274827‑M1/1‑37 (MQ=255) gCAACCTATTTATTACAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgatttcttatcgctatatacctctggt > 1:303582‑M1/1‑26 (MQ=255) ttattaCAACAGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcatgattagccatgtctttttcacggaaatagtgttttatactggttggtgatttcttatcgctatatacctctggttattagat < 1:118826‑M1/250‑234 (MQ=255) aacaGGGCAAcataggtggcggccgctctagaactagtggatccccctaatccgcctttgtcatcttttattgccataagccagtcgatgctggcttattttctttgcagtcaaaatacgggcgttagattttacaacgattggtgattttttgttcgcaggattagccatgtctttttcacggaaatagtgttttatactggttggtgatttcttatctctatatacctctggtttttatatccctcctt < 2:255353‑M1/251‑242 (MQ=255) | GCGGCTTTTACTGTAGAAGTTCTGGCCGAGATGCCAGTCTGAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAATGGCTTTCAGCCGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGG > NC_000913/416893‑417379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |