New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 364355	0 (0.000)	11 (0.330) +CGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATT	10/398	1.4	63.9%	coding (1951/3075 nt)	lacZ	beta‑galactosidase
	?	NC_000913	= 4171921	15 (0.370)					intergenic (+165/‑136)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATGCAACCG  >  NC_000913/4171671‑4172168                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                        ccacATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGACTTTAGTATTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGCGCGGATTTGAACTTTGCGAAGCAAC‑GGCCCGGAGGG‑GGCCGGGCAGGACGCCCGCCATAAAATGCCAgg                                                                                                                                                                                                                                                         >  1:151406/4‑251 (MQ=11)           cgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccctaaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGCCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGGACGCTCTCATGAGTAGGACCAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGGCGGACGGCCGCCAtaaactgccaggaattgattgc                                                                                                                                                                                                                                               <  2:296390‑M1/183‑11 (MQ=255)            aCTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCCGGAATCAAATTa                                                                                                                                                                                                                                               >  2:2948/1‑250 (MQ=18)                   aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGa                                                                                                                                                                                                                                         >  1:406348/1‑249 (MQ=33)                                                               gccaggaattaattccccaggcatcaaataaaacGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtg                                                                                                                                                                                           <  1:420234‑M2/235‑63 (MQ=255)                                                                                         aaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGacttaattccccaggcatcaaatacaacgaaaggcacagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgtacgctc                                                                                                                                                                 <  2:313002‑M2/251‑89 (MQ=255)                                                                                           aaaaaCGAAAGGCTCAGGCGAAAGGCTGGGCCTTTTGTTTTATCTTTTGTTTGGGGGTAAACCCCCTCGTGAGTAGGAAAAATCCGCGGGGAGGGTATTTGAACGTTGAGAAGCAAC‑GGCCGGGGGGG‑GGGGGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATcccccc                                                                                                                                                               <  1:299242/250‑1 (MQ=17)                                                                                                 gAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagt                                                                                                                                                         <  1:25167‑M2/251‑97 (MQ=255)                                                                                                 aaaagccacaggcGAAAGCCGGGGCTTTTCGTTTTATCTGTTGTTTGTCGGTGACCGCTCTCCGGAGAAGAAAAAACCCGCGGGGGGCGGATTGGAACGTTGCGAAGCAAG‑GGCCGGGGGGG‑GGGCGGGAAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGAt                                                                                                                                                         <  1:59325/239‑1 (MQ=17)                                                                                                              gAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgt                                                                                                                                            <  2:401794‑M2/251‑110 (MQ=255)                                                                                                                                 tttATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATACACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatctgagctcctgccctggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctcttgctgtcgctccacaaggtaaaca                                                                                                                          <  2:151538‑M2/250‑128 (MQ=255)                                                                                                                                      cTGTTGTGTGTCGGTGAACGCTCTCCTGTGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑GGGCGGGCAGGACGCACGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGACATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAagc                                                                                                                      >  2:17862/1‑249 (MQ=255)                                                                                                                                            tttgtCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaac                                                                                                              <  1:111670‑M2/251‑140 (MQ=255)                                                                                                                                                  ggTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctg                                                                                                         <  1:13644‑M2/250‑145 (MQ=255)                                                                                                                                                        cGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCACC‑GGCCCGGAGGG‑TGGCGGGCCGGACGCCCGCCATAAACTGCCAGGCCTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATAc                                                                                                                                                       >  2:61845/1‑198 (MQ=255)                                                                                                                                                         gCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtg                                                                                                 <  1:257725‑M2/251‑153 (MQ=255)                                                                                                                                                                tGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggc                                                                                           <  1:19057‑M2/250‑159 (MQ=255)                                                                                                                                                                  aGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGa                                                                                         >  2:105458/1‑250 (MQ=255)                                                                                                                                                                   gTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAac                                                                                       >  1:291758/1‑251 (MQ=255)                                                                                                                                                                      ggaacaaccccggggggggtgatttgaatgttggggagcaaCCGGCCGGGGGGG‑GGGGGGGGAGGCCTCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagc                                                                                     >  1:296390‑M2/21‑87 (MQ=255)                                                                                                                                                                           aaTCCGGCGGGAGGGGATTTGAACGTTGCGAAGCAA‑‑GGCCGGGGGGGGTGGGGGGAAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgcc                                                                               >  1:313002‑M2/1‑81 (MQ=255)                                                                                                                                                                                gccgGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑CGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGCAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTgaccttg                                                                          >  2:150467/1‑245 (MQ=255)                                                                                                                                                                                      aGCGGATTTGAACGATGCGAAGCAAC‑GGCCCGGAGGG‑AGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctaatgattgaaagcttatcatcggagctccagcactggatggtggcgctggatggtaagccgctggcacgcggggaagtgcctctggatgacgctccacaaggtaaacagttgattgaactgactgaactcacgcagccggagagcgccgggcaactctggct                                                                    <  1:346545‑M2/251‑182 (MQ=255)                                                                                                                                                                                                  cGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCCTAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagccgaaagactgggcctttcgttttatctgttgtttgtcggtggacgctctcatgagtaggaccaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcggggcggacggccgccataaactgccaggaattgattgc                                                        <  2:296390‑M2/251‑194 (MQ=255)                                                                                                                                                                                                   gTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagtacgcgt                                                        <  1:261874‑M2/250‑194 (MQ=255)                                                                                                                                                                                                                        gggggtggggggcggccccgccgccataaactgccaggaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagtacgcgtagtgcaaccgaacgcgaccg                                    >  2:25167‑M2/21‑38 (MQ=255)                                                                                                                                                                                                                                    ggggACCCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTc                        <  1:225218/249‑1 (MQ=255)                                                                                                                                                                                                                                    aggcaCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGGTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATGGTATGTGCCGAAGACGAACAACAATTACTc                        <  1:45275/247‑1 (MQ=255)                                                                                                                                                                                                                                       gACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAAt                     >  1:96930/1‑251 (MQ=255)                                                                                                                                                                                                                                        ccgcccgccaTAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagtacgcgtagtgcaaccgaacgcgaccgcatggtcagaagccgg                    >  1:252889‑M2/2‑22 (MQ=255)                                                                                                                                                                                                                                          gcccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACGCAATGcc                  <  1:109898/251‑1 (MQ=255)                                                                                                                                                                                                                                                 aTAAACTGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggatctcctgcactggatggtggcgctggatggtaagccgctggcaagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagtacgcgtagtgcaaccgaacgcgaccgcatggtcagaagccgggcacatcag           >  2:261874‑M2/1‑13 (MQ=255)                                                                                                                                                                                                                                                     aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATGc       >  2:347602/1‑251 (MQ=255)                                                                                                                                                                                                                                                       tGCCAGGaattggggatcggaattctcatgtttgacagcttatcatcggagctcctgcactggatggtggcgctggatggtaagacgctggccagcggtgaagtgcctctggatgtcgctccacaaggtaaacagttgattgaactgcctgaactaccgcagccggagagcgccgggcaactctggctcacagtacgcgtagtgcaaccgaacgcgaccgcatggtcagaagccgggcacatcagcgcctg     <  2:33092‑M2/251‑245 (MQ=255)                                                                                                                                                                                                                                                          cAGGCAGCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATGCAACCg  <  2:224294/251‑1 (MQ=255)                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                        CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC‑GGCCCGGAGGG‑TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATGCAACCG  >  NC_000913/4171671‑4172168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.