New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 364355	0 (0.000)	11 (0.330) +CGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATT	10/398	1.4	63.9%	coding (1951/3075 nt)	lacZ	beta‑galactosidase
	?	NC_000913	= 4171921	15 (0.370)					intergenic (+165/‑136)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

GACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCGTTATCGCTATGACGGAACAGGTATTCGCTGGTCACTTCGATGGTTTGCCCGGATAAACGGAACTGGAAAAACTGCTGCTGGTGTTTTGCTTCCGTCAGCGCTGGATGCGGCGTGCGGTCGGCAAAGACCAGACCGTTCATACAGAACTGGCGATCGTTCGGCGTATCGCCAAAATCACCGCCGTAAGCCGACCACGGGTTGCCGTTTTCATCATATTTAATCAGCGACT  >  NC_000913/364139‑364585                                                                                                                                                                                                                         |                                                                                                                                                                                                                                       gACGCCACTGCTGCCAGGCGCTGATGGGCCCGGCTGCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattcctatc                                                                                                                                                                                                      <  2:136044‑M1/251‑35 (MQ=255)               cAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTGGCCAGCGTCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggca                                                                                                                                                                                        <  2:33092‑M1/251‑49 (MQ=255)                     cTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGATCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttat                                                                                                                                                                                  >  2:261874‑M1/1‑197 (MQ=255)                              ccGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgg                                                                                                                                                                         >  1:252889‑M1/1‑188 (MQ=255)                                              cGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcggcggggccgccccccaccccc                                                                                                                                                         >  2:25167‑M1/1‑172 (MQ=255)                                                                  aCGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaac                                                                                                                                      <  1:261874‑M1/250‑99 (MQ=255)                                                                              aGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGTGAGTTCAGTCAGTTCAATCAACTGTTTACCTTGTGGAGCGTCATCCAGAGGCACTTCCCCGCGTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCTGGAGCTCcgatgataagctttcaatcattagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgcctccctccgggccgttgcttcgcatcgttcaaatccgct                                                                                                                         <  1:346545‑M1/251‑112 (MQ=255)                                                                                      ttGCCCGGCGCTCTCCGGCTGCGGTCGTTCAGGCAGTTCAATCACCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaa                                                                                                                                                                                                 >  1:227893‑M1/1‑132 (MQ=255)                                                                                      ttGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAACCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCACCCAGCGCCATCATCCAGTGCAGGAGCGCcgatgataagctgtcaaacacgagaattccgatccccaa                                                                                                                                                                                                 <  2:227893‑M1/171‑40 (MQ=255)                                                                                               gcTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggaggcctcccccccccccccccggccggttgctccccaacattcaaatcaccccccccggggttgttcc                                                                                                        >  1:296390‑M1/1‑123 (MQ=255)                                                                                                                   cAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcacc                                                                                     <  1:13644‑M1/250‑148 (MQ=255)                                                                                                                                    tGTTTACCTTGTGGAGCGACAGCAAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGGGCAGGAGCTCagatgataagctgtcaaacatgagaattccgatccccaattcctggcagtgtatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaa                                                                    <  2:151538‑M1/250‑165 (MQ=255)                                                                                                                                                      aCATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttc                                                 <  2:401794‑M1/251‑184 (MQ=255)                                                                                                                                                                                                     caccaTCCAGTGCAGGAGCTCcgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaattcctggc  <  1:420234‑M1/251‑231 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                                       GACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCGTTATCGCTATGACGGAACAGGTATTCGCTGGTCACTTCGATGGTTTGCCCGGATAAACGGAACTGGAAAAACTGCTGCTGGTGTTTTGCTTCCGTCAGCGCTGGATGCGGCGTGCGGTCGGCAAAGACCAGACCGTTCATACAGAACTGGCGATCGTTCGGCGTATCGCCAAAATCACCGCCGTAAGCCGACCACGGGTTGCCGTTTTCATCATATTTAATCAGCGACT  >  NC_000913/364139‑364585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.