New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4628620	23 (0.630)	12 (0.330)	10/478	1.2	33.9%	intergenic (+73/+235)	nadR/ettA	DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA
	?	NC_000913	4634847 =	24 (0.660)					coding (464/870 nt)	rob	DNA‑binding transcriptional dual regulator Rob

CGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCG  >  NC_000913/4634608‑4635083                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                               cGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGCTAAAGCATTTCATGGCGGAAAT‑CAGGGAtt                                                                                                                                                                                                                                    >  2:33801/1‑251 (MQ=255)               tCATCGGTAAACATCACATATGCGCCGCCCTGCCGCAGTACCGGATGCCCTGTCAGTTCATAGCCATCTGCATGAGCCTGGGCTAGCGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGTCCGTAGAGCACCGGCGGAATGGTCGGCGCGTGGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CATAGATTTGCTCCTGCGagc                                                                                                                                                                                                                       <  2:163626/250‑3 (MQ=255)                  cggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGAACAgg                                                                                                                                                                                                                    >  1:153282‑M2/223‑250 (MQ=255)                  cggtggagcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcggttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑a                                                                                                                                                                                                                  <  2:30247‑M2/29‑1 (MQ=255)                     tggatcgcaaagagttccagaacctgctggaggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGCACAGG‑AGt                                                                                                                                                                                                                >  1:319422‑M2/220‑250 (MQ=255)                         aCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGctc                                                                                                                                                                                                           <  1:120/251‑1 (MQ=255)                                 agttccagaacatgatggtggagatgctcgaagagaacaatatcgaatttgagcgggttgaagaggaagattacgacagtcgattcctgcgctgcgtggaactggggcgggagatgatgggggagcagagataacagagatgaaactgctcaaaggcgcggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGACCTGGGTAac                                                                                                                                                                                                   >  2:387890‑M2/208‑251 (MQ=255)                                             tGCAGCATCACCGTATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGCTAACGCATTTCATGGCGGAAAT‑CACAGCTTTGCTCCAGCGCACAGGGAG‑AGCACTGGGTAAAACCAATCAgatg                                                                                                                                                                                       >  2:93081/1‑248 (MQ=255)                                                    tCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑CGTAGCTCTGGGTAACACCAATCAGCGGCGTATCt                                                                                                                                                                                >  1:347873/1‑251 (MQ=255)                                                      cccGGATGTCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCGAACGCGGTGGTATATAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCTGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCTTATCTTc                                                                                                                                                                              <  2:138174/250‑1 (MQ=255)                                                          gATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCTGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCATAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAgg                                                                                                                                                                          <  2:347873/251‑1 (MQ=255)                                                                      caatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaacggctcaaaggcgagggataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGAATCTTCCAGGGTGACAAATTtg                                                                                                                                                              >  1:94459‑M2/171‑251 (MQ=255)                                                                                      cgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGAtt                                                                                                                                                                                                                                    >  1:141268‑M2/155‑166 (MQ=255)                                                                                      cgggttgaagaggaagattacgacaggcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑cagagagt                                                                                                                                                                                                                                    <  2:141268‑M2/12‑3 (MQ=255)                                                                                           ccTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCGCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCa                                                                                                                                         <  1:23035/251‑1 (MQ=255)                                                                                                        ggtggtATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATc                                                                                                                                                                                 <  1:249368/198‑1 (MQ=255)                                                                                                        ggtggtATAGAATACCTCTTGCTCGTCGACTTTATCCTGACTCGGACGCGTTTCATTCCGGCCGTAGAGCACAGGCGGCATGGTCGGCGCGTTGCCGAGAAACTCGTGCCAGAACTGATAACGCCTTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACCGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATc                                                                                                                                                                                 >  2:249368/1‑198 (MQ=255)                                                                                                            gtATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGcggcgg                                                                                                                        <  1:253593/251‑1 (MQ=255)                                                                                                             cagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAGAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCggcggg                                                                                                                       <  1:347099‑M2/120‑1 (MQ=255)                                                                                                                aGAATACCTCTTGCTCGACGTCTTTATCCTGACTCGGACGAGTTTCCTCCAGGCGGTAGAGCACCGGCGGAATAGTCCGCGAGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATACA‑AAAATTGCTCCAGCGCACAGG‑AGTAACTCTTGGAAACACCAATCAACGGGGAATCTTCCAGAGGGGCAAATTTGTACTCTGGCATAGGGAATTTAcccgagcgagacggcgggcgc                                                                                                                    >  2:343093/1‑233 (MQ=255)                                                                                                                      cctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATAcc                                                                                                               <  2:321636‑M2/128‑1 (MQ=255)                                                                                                                                            cgtgagatgttgggggagcagagataacagtgatgaaactgctaaaaggcgaggtataaaatgagtttttttgatgagttgaacacctctctggacgaggAAAT‑AAGAGATTTGCTCCAGCGACCAGG‑AGCAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTAACCCAGGCGTATCGGCGGGCGGATAACAAACGCGCGCCATTcacgaggac                                                                                        >  2:215680‑M2/101‑248 (MQ=255)                                                                                                                                                  cGGACGCGTTTCATTCATGACGTAGAGCACCGGCTGAAGGGGCGGTGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGTATTTCATGTCGGAAAT‑CAGATATTTGCTACAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCATCGTCGTATCTTCCAGGGTGACAAAGTTGTGCTCTGGCCTAGTGAATTCACCCAGGCGTAGCTGCGGGCTAATACCAAAGGCGCTCCATTCAGGCGAAcggcagt                                                                                  <  2:13808/251‑4 (MQ=255)                                                                                                                                                  cGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGt                                                                                  <  1:33801/251‑1 (MQ=255)                                                                                                                                                       gggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATGCCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGt                                                                             <  1:37495‑M2/162‑1 (MQ=255)                                                                                                                                                           ttcattcaGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGGGGATACCAAAGAGGGTCCCTTTAGGAGAAaggcggggaaaagg                                                                           >  1:303085/1‑241 (MQ=255)                                                                                                                                                              attcaGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGGATACCAAAAGCGCCCCCTTCAGGGGAAaggcggggaaaggcagggg                                                                      >  1:124053/1‑238 (MQ=255)                                                                                                                                                                 agataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCt                                                                   <  1:401249‑M2/172‑1 (MQ=255)                                                                                                                                                                                          gTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTTCAGGAg                                                                      <  1:319873/223‑1 (MQ=255)                                                                                                                                                                                                      ccGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAGTGTCTg                              <  1:114188/251‑1 (MQ=255)                                                                                                                                                                                                         agaAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTGCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTg                           <  2:143510/251‑1 (MQ=255)                                                                                                                                                                                                         agaAAATCGTGCCAGAACTGATAACGCATGTCATGGCGGAAAT‑CAGAGACTTGCTCCAGCGAACAGG‑AGTAGCTCTTGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCTCTCGATTCAGGAGATCGGCGGTAAAGTGCAGGAGTCTGGGCAAACTTCTTCTGGAATGCGCGGGTatgtttctgttg                           <  2:131901/251‑12 (MQ=255)                                                                                                                                                                                                                cGTGCCAGAACCGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCg                    <  1:153267/251‑1 (MQ=255)                                                                                                                                                                                                                     cAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGATTCGAAGCg               <  2:157556/251‑1 (MQ=255)                                                                                                                                                                                                                            gagaaCGCATTTCATGGCGGAAAT‑CAGATATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGGGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGATAGTCGAAGCGGTAta          <  2:257527/246‑2 (MQ=255)                                                                                                                                                                                                                                  gCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGcgcg  <  2:124053/251‑1 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                               CGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAAT‑CAGAGATTTGCTCCAGCGAACAGG‑AGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCG  >  NC_000913/4634608‑4635083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.