New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4628620	23 (0.630)	12 (0.330)	10/478	1.2	33.9%	intergenic (+73/+235)	nadR/ettA	DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA
	?	NC_000913	4634847 =	24 (0.660)					coding (464/870 nt)	rob	DNA‑binding transcriptional dual regulator Rob

CGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAC  >  NC_000913/4628372‑4628868                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                         cGGATGGTTTACGCATTCGCGGCAGTTCGGTGGATCGCAAAGAGTTCCATAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAATATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGGGCGTGAGATGATGGGGGAGCAGAGATAACTGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTGTGATGAGTGGAAACCCTCTCTGGAAGAGGca                                                                                                                                                                                                                                                        <  2:250089/251‑2 (MQ=255)           aCGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTa                                                                                                                                                                                                                                              <  2:52767/251‑1 (MQ=255)            cGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTa                                                                                                                                                                                                                                              >  1:61438/1‑250 (MQ=255)                            cGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacagg                                                                                                                                                                                                                              >  1:153282‑M1/1‑222 (MQ=255)                            cGGTGGAGCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGGTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacagga                                                                                                                                                                                                                             <  2:30247‑M1/251‑30 (MQ=255)                              gTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGGATAAACTGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAAcc                                                                                                                                                                                                                           >  1:86277/1‑251 (MQ=255)                               tGGATCGCAAAGAGTTCCAGAACCTGCTGGAGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgcacaggagt                                                                                                                                                                                                                           >  1:319422‑M1/1‑219 (MQ=255)                                           agTTCCAGAACATGATGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGAGCGGGTTGAAGAGGAAGATTACGACAGTCGATTCCTGCGCTGCGTGGAACTGGGGCGGGAGATGATGGGGGAGCAGAGATAACAGAGATGAAACTGCTCAAAGGCGCGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagacctgggtaac                                                                                                                                                                                                              >  2:387890‑M1/1‑207 (MQ=255)                                                 aGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCAc                                                                                                                                                                                                        >  2:147234/1‑251 (MQ=255)                                                       tGCTGGTGGAGCTGCTCGAAGAGACAAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGCTGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGCTGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGGTTAAACAAGGTTTGAAAAACCCTGCACGGGTGACCCGCCACGAAAtt                                                                                                                                                                                                  >  2:202715/1‑251 (MQ=255)                                                         cTGGTTGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGTGTAATGAGGACGATTACGACAGTCGTTTCCTGAGCTGCGAGGTACTGGTGCTGGAGGTGATGGAGGAGCAGAGATAACCGGGTTGAGACTGCTCAAAGGCGCGGAATACAATGAGTTTATTTGATGAGTTGAAAACCTCTCGGAAAAAGGCGGACGAGATTAAAAAAGGTTTGAAAAAAAAGGCGCTGGTGACACGCCAAGAAATTg                                                                                                                                                                                                 >  2:77944/1‑250 (MQ=255)                                                                  aTGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTa                                                                                                                                                                                        >  1:188834/1‑250 (MQ=255)                                                                                gtgtgcttttccgatcggggTTGAAGAGGAAGATTACGACAGTCGTTCCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTAAAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCGGGAAGAGGCTGTCGAGATTAAACAAGGTTTAAAAAACCCTGCACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGAcc                                                                                                                                                                         <  1:419332/234‑1 (MQ=255)                                                                                cAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACGGCTCAAAGGCGAGGGATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgaatcttccagggtgacaaatttg                                                                                                                                                                         >  1:94459‑M1/1‑170 (MQ=255)                                                                                               gCGGGTTGAAGAGGAAGATACCGACAGTCGTTTCCGGCGCTGCGTGGAACTGGTGCGGGATATGATGGGGGAGCAGAGATACCCGTTATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGAGGATTTAAAACCCTCTCTGGAAGAGGTTGTCGAGATTAAACAAGGTTTAAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCAc                                                                                                                                                          <  1:15670/251‑1 (MQ=255)                                                                                                cGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatt                                                                                                                                                                                                                                              >  1:141268‑M1/1‑154 (MQ=255)                                                                                                cGGGTTGAAGAGGAAGATTACGACAGGCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagagt                                                                                                                                                                                                                                              <  2:141268‑M1/166‑13 (MQ=255)                                                                                                 gggTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGCTGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGAcc                                                                                                                                                                         >  2:419332/1‑234 (MQ=255)                                                                                                     tGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGAATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCAcgccgc                                                                                                                                                     >  1:417858/1‑250 (MQ=255)                                                                                                                       cAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGagatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcggg                                                                                                                                  <  1:347099‑M1/251‑121 (MQ=255)                                                                                                                                ccTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaatacc                                                                                                                          <  2:321636‑M1/250‑129 (MQ=255)                                                                                                                                               aCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCAt                                                                                                                                                   >  2:381583/1‑210 (MQ=255)                                                                                                                                               aCTGGGGCGGGAGATGAGGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGGGGTATAAAATGAGTTTTTTTGAGGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCAt                                                                                                                                                   <  1:381583/210‑1 (MQ=255)                                                                                                                                                      cgtgagatgtTGGGGGAGCAGAGATAACAGTGATGAAACTGCTAAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAACACCTCTCTGGACGAGGaaataagagatttgctccagcgaccaggagcagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattaacccaggcgtatcggcgggcggataacaaacgcgcgccattcacgaggac                                                                                                   >  2:215680‑M1/4‑100 (MQ=255)                                                                                                                                                      cGGGAGATGATGGGGGAGCAGCGATAACCGTGATGAACCTGCTCAAAGGCGAGGGATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGCAGAGGCTGTCGAGATTAACAAAGGTTTGAAAAAAAATGCACGGGTGACCCGCAACGAAATTGAGGTTGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATACGGCATTCGGTGCTCAATGCCTGATGCAACGCTTACCGCGTCTTATc                                                                                                   >  2:133568/1‑251 (MQ=255)                                                                                                                                                               atgGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGCTGAAAACCTCTCTGGAAGAGGCTATCGAGATTAAACAAGGTTTGAAAAAACATCCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGATGTTGTAGACCGGAAACGGTGTTCACGACGCATCCGGCATTCGGAGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCGGGCCTAc                                                                                           >  1:357822/1‑250 (MQ=255)                                                                                                                                                                 gggggAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaatgccaaaggcgctccattcaggagaacggcggtaaagt                                                                                        <  1:37495‑M1/251‑163 (MQ=255)                                                                                                                                                                           agaTAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcggtaaagtgcaggagtct                                                                              <  1:401249‑M1/251‑173 (MQ=255)                                                                                                                                                                                     gatgaAACTGCGAAAAGGCGAGGTATAAAATGAGTTTTTTGGAAGGGTAGAAAACCCCTGGGGAAGAGTCTGGCGAGAGAAAACAAGGTTAAAAAAAGCCGGCAGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCAGTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAAtt                                                                     <  1:19594/250‑1 (MQ=255)                                                                                                                                                                                           aCTGCTCAAAGGCGAGATATAAAATGATTTTTTTTGATGAGTTGAAACCCTCTCTGAAAGAGGCTGTCGAGATAAAACAAGGTTAGAAAAACCCTGCACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGtt                                                              <  1:154583/251‑1 (MQ=255)                                                                                                                                                                                                                         tttttGATGAGATGAAACCATCTCTGGCAGCGGCTGTCGAGATTAAACAAGGTTTTAACAACCCTGCACGGGTGACCCGCCACGCAATTGAGGATGCTACGGCTGTTGTAGACCCGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAACGCCTGATGCGACGCTTACCGCGCCTTATCAGGCCTACAGTTTTACAACGGATTGAAATCACTGGTTTTGCCGGCCGGATACGTCGTTCGcgccgcc                                >  2:49661/1‑250 (MQ=255)                                                                                                                                                                                                                                   gTTGAACACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGAGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCACTGCCTGATGCGACGCTTACCGCGTCTTATCAGGc                                                                                               >  2:366808/1‑178 (MQ=255)                                                                                                                                                                                                                                                gtGGAAGAGGTGGTCGAAATTAAACAAGGTTGGAAAAACCCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTc         <  1:393857/250‑1 (MQ=255)                                                                                                                                                                                                                                                      gagGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCCTTTTACGCATTACTTCGCAAt    >  2:227552/1‑250 (MQ=255)                                                                                                                                                                                                                                                       agGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCAGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc  >  1:84450/1‑251 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                         CGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAC  >  NC_000913/4628372‑4628868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.