New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4171749 =	22 (0.600)	7 (0.200) +GGAATTAATT	6/462	1.7	28.3%	noncoding (113/120 nt)	rrfB	5S ribosomal RNA
	?	NC_000913	= 4171921	15 (0.410)					intergenic (+165/‑136)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

CGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATGC  >  NC_000913/4171679‑4172163                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   aacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgacaggaattaattccCCAGGCATCCAATAAAACCAAAGGCTCAGTCGAAAGACTAGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGCGCGGATTTGAACGTAGCGACGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAaactgccagggaatgggg                                                                                                                                                                                                                                            <  1:211613‑M1/181‑9 (MQ=255)                       tAGCGCAGATGGCAGTGTGGGGACTCCCCATGCGAGCGTAGGGCACTGCAAGGCCTCAAATAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCATGAGTAGGAACAATCCGCCGTGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCCGGAAGCCCGCCATAACATGCCTGGCCTCAAATTatacagcaagcaatactgacg                                                                                                                                                                                                                      >  2:363090/1‑231 (MQ=11)                               agggtgggggggggcccccccAGGCGAGAGTGGGGAAGTGCCAGGAATAAAAAAAAACGAAAGGCCCAGTCGAAAGGCGGGGCTTTTTGTTTTATTTGTTGTTTGGCGGGAAACGCCCCTGGGGGTAGGAAAAATCCGCGGGGAGGGGATTTGAACGTGGCGAAGAAACGGCCCGGGGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCt                                                                                                                                                                                                              <  1:328534/234‑1 (MQ=2)                                           ggTCTCCCAATGCGAGAGTAAGGAAATGACAGGCATCAAATAAAACGCACGACTCAGTCGAAAGACTGGGCCATTCGTTTTATCTGTTGTTTGTCGGTGAAAGCTATCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTACGAAGCAACGGCCCGGCGGGGGACGGGCATGACGCCCGCCATAAACTGACCGGCATCAAATTAAGCAGAAGGCAATCCTGCAGGATGGCATTTTTGCGTTTCt                                                                                                                                                                                                  >  2:208869/1‑251 (MQ=11)                                                       gccagtaattaattccccaggcatcaaataaaacGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTATCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattcccccggactccaaaaaaacgaaaagcgccgtggaaagaatggggctttcattt                                                                                                                                                                                      <  2:313894‑M2/235‑63 (MQ=255)                                                                              tCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTCGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATc                                                                                                                                                               >  2:112920/1‑251 (MQ=255)                                                                                             ggCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACgg                                                                                                                                                >  1:212689/1‑251 (MQ=255)                                                                                                       aaaGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgcc                                                                                                                                      <  1:339277‑M2/251‑111 (MQ=255)                                                                                                        aaGACCGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCCACGGCACGGAGGGAGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAAATACGGTAAACTAGCCt                                                                                                                                     >  1:348409/1‑251 (MQ=255)                                                                                                           actgggaaattCGTTTTATATGTTGTTTATCGATGAACCATCTACTGCGTAAAAAAAACCCGAAGGGACCGGATTTGAAAGTTGCGACGCAACGGACCGGAGGGTGCCGGGCAGAACGCCAGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCCTCCTGACGGATGGCCTTTTTACGTTTCTACAAACTCTTCCTGTCGTCACATCTACAAGCCCTCCCCCCACAGATACGCTAACCTCGCCTCGt                                                                                                                                  >  2:42843/10‑251 (MQ=12)                                                                                                             tGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccgggcatcaaattcaaccaaaggatcagccgaaagactggaccgtttgtttttgctggtgtttgccggtggacgcactcctgagtaggccaaatacgccgggagc                                                                                                                                <  2:185388‑M2/251‑117 (MQ=255)                                                                                                                         tttATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAACTCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGCCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctccgtcgaaaaactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgcgtaggacaaatccgccgggagcggatttgaacgt                                                                                                                    <  1:23185‑M2/251‑129 (MQ=255)                                                                                                                           tATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGaa                                                                                                                    >  1:204591/1‑249 (MQ=255)                                                                                                                                             gAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccgggg                                                                                                <  1:397394‑M2/251‑149 (MQ=255)                                                                                                                                                                        gcggggggCGGATTTAAACTGTGCGAAGAAACGGCCGGGGGGGTGGGGGGAGGGCCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTAGCATTg                                                                     <  1:111183/244‑1 (MQ=37)                                                                                                                                                                                        aaCGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGACAGGaattaattccccaggcatccaataaaaccaaaggctcagtcgaaagactaggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggcgcggatttgaacgtagcgacgcaacggcccggaggggggcgggcaggacgcccgccataaactgccagggaatgggg                                                     <  1:211613‑M2/251‑192 (MQ=255)                                                                                                                                                                                             tGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgcccggaattggggatcgg                                                <  1:65411‑M2/251‑197 (MQ=255)                                                                                                                                                                                                gAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTAt                                             >  1:161880/1‑251 (MQ=255)                                                                                                                                                                                                                                          aaCTGTCAGGCATGAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTGCCTGTCGTCATATCTACAAGCCAGCTCTCCACAGATACGGTAAACGAGCCTCGTTTTTGCATCAGTAAAGCAGCTATGAACCACTCCTTaaaa                                                                                           <  2:412644/163‑1 (MQ=37)                                                                                                                                                                                                                                          aaCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTATTTGCGTTTCTACAAACTATTCATGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAACCTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTaaaa                                                                                           >  1:412644/1‑163 (MQ=255)                                                                                                                                                                                                                                           aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATGc  >  1:302649/1‑251 (MQ=255)                                                                                                                                                                                                                                             tGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATg   >  1:55888/1‑248 (MQ=255)                                                                                                                                                                                                                                             tGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTAGGTGCCGAAGACGAACAACAATTACTCAATGCCTGTCAGTATg   <  2:55888/248‑1 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   CGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGGAAAGCAGCTATGAACCACTCCTTAAAACCCTGGAACACATTTGGCATTGATCATAATGCTCAGCACATTGTATGTGCCGAAGACGAACAACAATTACTCAATGCCTGGCAGTATGC  >  NC_000913/4171679‑4172163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.