New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4171749 =	22 (0.600)	7 (0.200) +GGAATTAATT	6/462	1.7	28.3%	noncoding (113/120 nt)	rrfB	5S ribosomal RNA
	?	NC_000913	= 4171921	15 (0.410)					intergenic (+165/‑136)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

GCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCC  >  NC_000913/4171502‑4171983                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           gCGTTGAGCTAACCGGTACTAAGGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCa                                                                                                                                                                                                                                          <  1:141614/250‑1 (MQ=14)       aGCTAACCGGTACTAATGAGCCGTGAGTCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATTCAGATTAAATCAGAACGCAGAAGCGTTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGTCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCa                                                                                                                                                                                                                                   <  2:307574/251‑1 (MQ=9)            aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAGGCGAGAGTAGGGAACTGCCAGGCATCAAATaa                                                                                                                                                                                                                              <  1:137248/251‑1 (MQ=17)                  aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGAGTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGaa                                                                                                                                                                                                                        <  2:225442/251‑1 (MQ=21)                     aaTGAACCGTGAGGCTTAACCGTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCGGGCTGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTATCGCCGATGGTAGTGTGGGGTCTCCCCATGCGATAGGAGGGAACTGCCAGGCATCAAATAAAACGAAAgg                                                                                                                                                                                                                     <  1:348619/251‑1 (MQ=255)                      aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGc                                                                                                                                                                                                                    <  1:396792/251‑1 (MQ=35)                      aTGAACCGTGAGGCTCCACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGCAGTTTTTCAGCCTGATACAGACTAAATCAGAACGCAGAAGCGGACTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGCGGCCCCACCCGACCCCATCCCGAACTCAGAAGGGCAACGCCGTAGCGCCGATGGCAGTTAGGGGTCTCCCCATGCGAGAGCAGGGAACTGCGAGGCATCAAATAAAACGaaacgc                                                                                                                                                                                                                    >  2:42871/1‑248 (MQ=11)                                     tAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTTGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACt                                                                                                                                                                                                      <  1:207614/250‑1 (MQ=38)                                               aCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGt                                                                                                                                                                                           <  1:375837/251‑1 (MQ=37)                                                 gccagtaattaattccccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctatcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCCGGACTCCAAAAAAACGAAAAGCGCCGTGGAAAGAATGGGGctttcattt                                                                                                                                                                                         <  2:313894‑M1/52‑5 (MQ=255)                                                             ttGGCGGATGAGAGAGGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAACACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTATCGCCGATGGTAGAGTGGGGTCTCCCCATGCGAGAGAAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTAAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt                                                                                                                                                                             >  2:111183/1‑251 (MQ=255)                                                                      gagagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa                                                                                                                                                                     >  1:375506/1‑250 (MQ=33)                                                                        gagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACg                                                                                                                                                                  <  1:42871/251‑1 (MQ=33)                                                                                            aCAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGTCCTGTCGTTTTAGCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAt                                                                                                                                              <  1:234276/251‑1 (MQ=18)                                                                                                 aaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgcc                                                                                                                                         <  1:339277‑M1/100‑1 (MQ=255)                                                                                                       tgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCGGGCATCAAATTCAACCAAAGGATCAGCCGAAAGACTGGACCGTTTGTTTTTGCTGGTGTTTGCCGGTGGACGCACTCCTGAGTAGGCCAAATACGCCGGGAGc                                                                                                                                   <  2:185388‑M1/106‑1 (MQ=255)                                                                                                       cAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAg                                                                                                                                    <  1:398037/250‑1 (MQ=33)                                                                                                       cAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACACAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGc                                                                                                                                   <  2:178743/251‑1 (MQ=18)                                                                                                             gCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGt                                                                                                                                                       <  1:216456/225‑1 (MQ=33)                                                                                                             gCAGAAGCGGTCTAATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTTACCCCATTCCGAAGTCAGAAGAGAAACGCCGTAGCGCCGATGGTAGTGTGGGGACTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCCGTCAAAAGACTGGGCCTTTCGTTTTATCTGTTGATTGTCGAGGAACGCTATCCTGAgg                                                                                                                                                       >  2:216456/1‑224 (MQ=11)                                                                                                                   tttatctgttgtttgtcggtgaacgctctcctgagtaggacaactccgccgggagcggatttgaacgttgcgaagcaacggcccggagggtgccgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCCGTCGAAAAACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGCGTAGGACAAATCCGCCGGGAGCGGATTTGAACGt                                                                                                                       <  1:23185‑M1/118‑1 (MQ=255)                                                                                                                           aTAAAACAGAATGTGCCTGGCGGCAGTAGCGCTGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCGCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGTCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTTAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGc                                                                                                               <  2:236597/251‑1 (MQ=255)                                                                                                                                       gaacgctctcctgagtaggacaaatccgccgggagcggatttgaacgttgcgaagcaacggcccggaggggggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCccgggg                                                                                                   <  1:397394‑M1/138‑3 (MQ=255)                                                                                                                                                      aGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAc                                                                                    <  1:230457/251‑1 (MQ=33)                                                                                                                                                                                  aacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgacaggaattaattccCCAGGCATCCAATAAAACCAAAGGCTCAGTCGAAAGACTAGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGCGCGGATTTGAACGTAGCGACGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAaactgccagggaatgggg                                                        <  1:211613‑M1/181‑9 (MQ=255)                                                                                                                                                                                       tgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgcccgccataaactgcccggaattggggatcgg                                                   <  1:65411‑M1/186‑17 (MQ=255)                                                                                                                                                                                                        tAGCGCAGATGGCAGTGTGGGGACTCCCCATGCGAGCGTAGGGCACTGCAAGGCCTCAAATAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCATGAGTAGGAACAATCCGCCGTGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCCGGAAGCCCGCCATAACATGCCTGGCCTCAAATTatacagcaagcaatactgacg                                  >  2:363090/1‑231 (MQ=11)                                                                                                                                                                                                                agggtgggggggggcccccccAGGCGAGAGTGGGGAAGTGCCAGGAATAAAAAAAAACGAAAGGCCCAGTCGAAAGGCGGGGCTTTTTGTTTTATTTGTTGTTTGGCGGGAAACGCCCCTGGGGGTAGGAAAAATCCGCGGGGAGGGGATTTGAACGTGGCGAAGAAACGGCCCGGGGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCt                          <  1:328534/234‑1 (MQ=2)                                                                                                                                                                                                                            ggTCTCCCAATGCGAGAGTAAGGAAATGACAGGCATCAAATAAAACGCACGACTCAGTCGAAAGACTGGGCCATTCGTTTTATCTGTTGTTTGTCGGTGAAAGCTATCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTACGAAGCAACGGCCCGGCGGGGGACGGGCATGACGCCCGCCATAAACTGACCGGCATCAAATTAAGCAGAAGGCAATCCTGCAGGATGGCATTTTTGCGTTTCt              >  2:208869/1‑251 (MQ=11)                                                                                                                                                                                                                                        gccagtaattaattccccaggcatcaaataaaacGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTATCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGaattaattcccccggactccaaaaaaacgaaaagcgccgtggaaagaatggggctttcattt  <  2:313894‑M2/235‑63 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           GCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCC  >  NC_000913/4171502‑4171983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.