New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	32 (0.870)	32/482	0.2	80.0%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	= 3263162	8 (0.220)					coding (499/1209 nt)	tdcD	propionate kinase

GGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAAT  >  NC_000913/2289885‑2290363                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                            ggTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCAACAGAAc                                                                                                                                                                                                                                       >  1:63765/1‑251 (MQ=38)    cGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCAGATCAGGGACTTGTGCGCACCTTCCATAACGCTGTAGCCACCAGAACAg                                                                                                                                                                                                                                     <  1:37697/250‑1 (MQ=255)            tccgttacccgtGGGGTAAAACGGCTCGATGACTTCCACCATTTTTTGCCATGGCAGAATCTGCACCAGGCGGGACAAGAAAATCTCGTTTATGGTCTGACGGCGCTTACTGCTGTATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCACATGACAAACATGATCTCATATCAGGGACTTGTTCGCTCCTTGCATACCGCTGTAGACACCAGAACATATATTGct                                                                                                                                                                                                                             <  2:293882/239‑2 (MQ=11)            aTTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCgg                                                                                                                                                                                                                            <  1:2493/251‑1 (MQ=255)                   gCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAATGTAAGTTGATGACTCATGATGAACCCTGTGCGAGGGCTCCAGAGGACAAGCAGGATCTCATATCAGGGACTTGTTCGCACCTTGCATAACGCGGTAGCCACCAGAACATATATTGCGTAACGACa                                                                                                                                                                                                                     <  2:140464/251‑1 (MQ=14)                    ccTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGATTCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTGGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTACAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAACTTCCATAACGCTGTAGCCAACAGAACAGATATTGCg                                                                                                                                                                                                                             >  1:293882/1‑242 (MQ=255)                                aCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGaa                                                                                                                                                                                                        <  2:309691/251‑1 (MQ=255)                                            cTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGCGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑c                                                                                                                                                                                           >  2:213418/1‑251 (MQ=255)                                                    aTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCt                                                                                                                                                                                   <  1:280424/251‑1 (MQ=255)                                                       ttttGCTATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGATAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTc                                                                                                                                                                                >  1:118646/1‑251 (MQ=255)                                                                          gcgccATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGAGTGATG‑CATTGATCTTTCATCCTATGAAATGAATTg                                                                                                                                                              <  1:325026/247‑1 (MQ=255)                                                                                 gCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                                                                                                                                                       >  1:157052/1‑250 (MQ=255)                                                                                   gggACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGATTTCATCCTATGAAATTAATTGCTGTTaaa                                                                                                                                                      >  1:391387/1‑249 (MQ=255)                                                                                                   ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                                                                                                                                              >  1:322714/1‑194 (MQ=255)                                                                                                   ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                                                                                                                                              <  2:322714/194‑1 (MQ=255)                                                                                                           tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTCTGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCAt                                                                                                                             >  2:332851/1‑250 (MQ=255)                                                                                                              tacggcacatacagctgAATTCACTGTCGGAGAAGGAAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACATAACGCTATAGCCACAAGAAAAGATATTGCGGAACGACAACGAGAAACAGAACCAGATTGATG‑CATTAAGTTTTAATCATATTAAATTAATTGCTGTTAAAAGCATAGTGTACAAAAAAAACCCAtcacc                                                                                                                         >  2:252830/14‑247 (MQ=18)                                                                                                                  gcgcTTACTGCTGATTTCACTGTCGGCGAAGGTAATTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGGTCGCACCTTCCATAACGCTGTAGCCGCCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTGCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAGCCATATCTCCAt                                                                                                                     <  2:39798/251‑1 (MQ=37)                                                                                                                   cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTc                                                                                                                                                                                >  1:418242/1‑191 (MQ=255)                                                                                                                   cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCGCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCTGAACGACAAAGAGAAATATAACCAGATTGATG‑CATGGAGCTTTc                                                                                                                                                                                <  2:418242/191‑1 (MQ=21)                                                                                                                           gctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGt                                                                                                            <  2:157052/251‑1 (MQ=255)                                                                                                                                    aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCt                                                                                                                                                            >  1:296816/1‑194 (MQ=255)                                                                                                                                    aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTAGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCt                                                                                                                                                            <  2:296816/194‑1 (MQ=255)                                                                                                                                                                  gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGTAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                                                                                                                                                       <  2:192270/169‑1 (MQ=255)                                                                                                                                                                  gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                                                                                                                                                       >  1:192270/1‑169 (MQ=255)                                                                                                                                                                                          gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGTGTACAGAAAATACCCATAGCTCCATTCCCGGAGTCAGTTTTTAAAAACTGTTTAAATAAATGCACAAGTATTGTTATTGATTTTTTAGTTGTTTTTc                                             <  2:391387/251‑1 (MQ=255)                                                                                                                                                                                                                cAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCaaa                        >  2:293368/1‑250 (MQ=255)                                                                                                                                                                                                                                     cATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAat  <  2:118646/251‑1 (MQ=255)                                                                                                                                                                                                                                     cATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAat  >  1:18190/1‑251 (MQ=255)                                                                                                                                                                                                                                     cATAAAGCTGTAGCCACCAGAACAGATATTGCGCACCGAAAAAGCGAAACCGAGCCAGCTTGATGTCAT‑GAGCTTTCATACTGTGAAATTACTTCCTCTTAAAAGCATTGGGTACAGAAAATACCCATAGATCCATACCCGGAGTCAGTTTTTaaca                                                                                                >  1:378959/1‑155 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                            GGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATG‑CATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAAT  >  NC_000913/2289885‑2290363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.