| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,228,095 | IS2 (+) +5 bp | coding (17‑21/660 nt) | ycgM → | putative isomerase/hydrolase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1228095 = | 0 (0.000) | 27 (0.800) | 24/482 | 0.4 | 100% | coding (17/660 nt) | ycgM | putative isomerase/hydrolase |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1228099 | 0 (0.000) | 23 (0.680) | 22/486 | 0.5 | 100% | coding (21/660 nt) | ycgM | putative isomerase/hydrolase |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
CAATGCCGATATTGAAAAGGTTAAACAGGCATTAACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1227872‑1228099‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCC < NC_000913/1469240‑1469021 CAATGCCGATATTGAAAAGGTTAAACAGGCATTAACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATTTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCA < 1:364529/251‑1 TGCCGATATTGACAAGGTTAAACAGGCATTCACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGAGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGGGAGGGGAACGTTATGTATCCACATCACAACTGGTAGACTGGACCCCTGAATCTCCAGAC > 2:216661/1‑251 ATATTGAAAAGGTTAAACAGGCATTAACCGAGCAAGGTTCCTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACC > 1:207185/1‑250 GAAAAGGTTAAACAGGCATTAACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCGTTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGGTATGTATCAACATCACAACTGGTAGGCTGGCCCCCTGAATCTCCAGACAACCAATAT < 1:361070/250‑1 AAAAGGTTAAACAGGCATTAACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA < 2:152507/251‑1 AGGCATTAACCGAGCAAGGTTACTATTTGCAGTTACAGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGACAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTG > 1:319469/1‑251 CATTAACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATTGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTTAGGGGAACGTTATGTATCAACATCACAACTGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA < 1:344743/251‑1 CATTAACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGGGAT > 1:222656/1‑250 GCAAGTTTACTATTTGCAGTTACCGCCTCCTCCCGAAGATTTGCTGAAGCAACATCTTTCCTTCATGGGGCAGAAAACAGACGGCACTAACAAATAACCGATATCCGGCGGTGGCATTAGCTTTGTCGGTGCGGTTTTTCATATCCTCGATAAGGTGAGGGGAGCGTTATGTATCAACATCACAACTGGTAGACTGGTCCCCTGAATGTCTAGAGTACCTATATCACTTAAATAAGTGATAGTCTTAATAC < 1:362283/251‑1 GTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTTGTAGACTGGCCCCCTGAAGCTCCAGACAACCAATATCACTT < 2:236684/224‑1 GTTACTATTTGAAGTTACCGCCACCACCCGAAGATTTGATGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAAACGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGCTATCATATCAACGATAAGGGGAGGGGAACGTTAAGTATCAACATCACAACTGGTAGACTGGCCCACTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTT > 2:322629/1‑251 AAGATATGCTGAAGCAACATCTTTCCGTCATGGGTCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGTTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCATAACTTGTAGACTGGCCACCTGAAGCTCCATATAACCAATATCACGTAAAGAAGTGATAGTTTTAAGACGAGTTTTTAGACTAGTCATTGGAGAACATATGATT < 2:327696/251‑1 GAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTA < 2:109715/250‑1 AAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATATTTGTCGGCGCGGGATTTCATATCCACGCTAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGAAAACCAATATCACTTAAATAAGTGATAGCCTTCATACTAGTTCTTAGACTCGTCATTTGAGAACAGATGATTGATGTCCTAGt > 2:25047/1‑250 gctGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTATACTAGTCATTGGAGAAGAGATGATTGATGTCTTAGGGCGGGAGAAACGCAGACGGCGTACCACGTAGGAAAAGAGCGCAATTGTTCAGCAGAGCTTT < 1:110656/248‑1 GGTGGCATTATCTTTGTCGGCGAGGGTTTTCATATCCACGATAAGGTGTGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGGCTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAACACACAGGAACAGTTCGCAATTGTTCAGCAGcgatttg > 2:281466/1‑243 GCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGAGCGGGGAACGTTCTGTATCAAAATCCCACCTGGTAGACCGGCCCCCTGAATCTCCAGACAACAAATATCACTTAAATAAGTGATAGCCTTAATACTAGTTTTTAGCCTAGTCATTGGAGAAAAGATGATTGATGTCTTAGGGCCGGAGAACCGCAGCCGGCGTACCACCCAGGAAAAGATAGCATTTGTTAAGCAGAGCTTTGAACCG > 1:199835/1‑251 GGTGAGGGGAACGTTATGTATCAACATCACAATTGGTAGACTGGCCCCCTGCATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGACATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAAACGGGGATGACGGTCTCCATCGTTGCCCGGCAACATGGagt > 2:26611/1‑246 GGTGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATACGTGATAGTCTTAATACTAGATTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGT > 1:289838/1‑249 TGAGGGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGC > 1:94951/1‑250 GGGAACGTTATGTATCAACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCC > 2:14638/1‑250 AACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACAC > 2:307704/1‑151 AACATCACAACTGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACAC < 1:307704/151‑1 CAATGCCGATATTGAAAAGGTTAAACAGGCATTAACCGAGCAAGGTTACTATTTGCAGTTACCGCCACCACCCGAAGATTTGCTGAAGCAACATCTTTCCGTCATGGGGCAGAAAACAGACGACACTAACAAATAACCGATATCCGGCGGTGGCATTATCTTTGTCGGCGCGGGTTTTCATATCCACGATAAGGTGAGGGGAACGTTATGTATCAACATCACAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1227872‑1228099‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCC < NC_000913/1469240‑1469021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |