Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	257908	258683	776	10 [0]	[1] 12	insB9–[crl]	insB9,insA9,[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 257907	0 (0.000)	11 (1.570)	8/312	0.0	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 family transposase B
	?	NC_000913	258684 =	0 (0.000)					pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

AAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGG  >  NC_000913/257771‑258103                                                                                                                                         |                                                                                                                                                                                                     aaaaTTTGCTAACTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGCGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgggaaaccggcaccggaagtgcgtgaatactggggctggtggatggagctggaagcgcaggaat                                                                                    >  1:142098‑M1/1‑137 (MQ=255)            aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacc                                                                         <  1:10772‑M1/251‑126 (MQ=255)                   ccAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgcgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt                                                                  >  1:63112‑M1/1‑119 (MQ=255)                                          nacaacagGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataa                                            >  1:38800‑M1/2‑96 (MQ=255)                                                 ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGCAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcg                                    >  1:144575‑M1/1‑89 (MQ=255)                                                                   aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCGCTAGGCTCGTATATTCGTGAAGTGAagtgcaatgataatcgattctttttcgatggtctgtctgtattcgtcaacgggaaaccggcgccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatac                                                                                  <  1:155185‑M1/187‑117 (MQ=255)                                                                                       gCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctntttngattntcnggctgtatgcgtcaangtgaaaccggcaccggaagtgcgtgaattctggggctggtggagnnannngnaagcgcag                                                                                        <  2:111047‑M1/161‑111 (MQ=255)                                                                                        cgntctnannaNNAAANTTACCGCACTAGGCCCGTATANNCGTGAAGGTNagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgnaaccggcacnngangtgctngnnntnnnggnctggtggatggagctggaancgnnggaatcncgttttacctacagttaccagtttgg                                                        <  2:36256‑M1/187‑143 (MQ=255)                                                                                              gATCAACAACTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggcagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgg                                                        >  1:36256‑M1/1‑44 (MQ=255)                                                                                                                         gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtatggctgtctgcgtcaacgtgaaaccggcaccggaagtgagtgaattctggggctggtggatggagctggaagcgccggaatcccgttttacctacagttacc                                                               >  1:73352‑M1/1‑17 (MQ=255)                                                                                                                            tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctgcagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagccactgaagn  <  1:18303‑M1/210‑197 (MQ=255)                                                                                                                                         |                                                                                                                                                                                                     AAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGG  >  NC_000913/257771‑258103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑