| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,091,006 | +C | coding (660/708 nt) | endA → | DNA‑specific endonuclease I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,091,005 | 1 | . | C | 80.0% | 25.4 / 1.0 | 10 | coding (659/708 nt) | endA | DNA‑specific endonuclease I |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (1/7); total (2/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGG‑C‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTC‑TTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCG > NC_000913/3090801‑3091218 | gaactgcaatccgttcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtaggccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggtttcgaaataaccatctgaactatcaggaactttcctgatctggctaattgcataccaaaGGGGCAGGGCC‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAagag < 1:129031‑M2/55‑1 (MQ=255) cccgaccgctgcaagtgccaggagcagcagctgaccgtccgccgccataatcgcgtagttcgtggcgaggccgactatcgcggtgtgcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttccggatctggctgattgcataccaaaGGTGCAGGGCC‑AATCAGATCCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGc < 1:236487‑M2/56‑1 (MQ=255) ggcggtcagcaccggttctggtcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCAGGGCC‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTC‑TTTTTGTTAACCCCTACCCCACGCGTACAACCGCgtn < 1:137436‑M2/114‑2 (MQ=255) cttaccgtacgccaccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCAGGGCC‑AATCATAACCCGTATTTGCAACGCGCTTGCCAGGCGCGAAag < 1:90446‑M2/53‑1 (MQ=255) ggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCAGGGCC‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTC‑TTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATc < 1:95300‑M2/147‑1 (MQ=255) gtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCAGGGCC‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATACCCCGCATTTatc > 1:12496‑M2/73‑233 (MQ=255) ctttccggatctttctgattgcataccaaaGGTGCAGGGCC‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGc < 1:123203‑M2/56‑1 (MQ=255) tcctgatctggctgattgcataccaaaGGTGCAGGGCC‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATGC‑TTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGTGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTTACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCg < 1:124022‑M2/223‑1 (MQ=255) gTGCAGGG‑CCAATCATANCNCGTACGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGNGGGATTC‑GTTNTGTNNACCCNTNCNCCACGCGTACAACCGCGTGGGGAGACGACNCGGATTTTTAACTATGCGTATCCNNCGNNNTTNNCATcc < 2:167476/163‑1 (MQ=255) gTGCAGGG‑CCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTC‑TTTTTGTTACCCCCTACCCAACGAGTACAACCGCGTGGGGAGACGAAGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATcc > 1:167476/1‑163 (MQ=255) | CCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGG‑C‑AATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTC‑TTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCG > NC_000913/3090801‑3091218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |