| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,089,711 | C→T | intergenic (+33/‑44) | galP → / → yggI | galactose:H(+) symporter/protein YggI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,089,711 | 0 | C | T | 95.5% | 54.5 / NA | 22 | intergenic (+33/‑44) | galP/yggI | galactose:H(+) symporter/protein YggI |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (12/9); minor base G (0/1); total (12/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
CTGGGTAACGCCAACACCTTCTGGGTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGCCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCG > NC_000913/3089517‑3089938 | cTGGGTAACGCCAACACCTTCTGGGTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCct > 1:99233/1‑230 (MQ=255) aaCACCTTCTGGGTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCTCGAAATAGGCGCTCACGATGAATCTCCCCAAGCTTCCTCCCATCGCGGAGTAATGCACCTCTTGCATTCATCTTTTCTTCGCTCTAGCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCg < 1:276254/251‑1 (MQ=255) gggTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTg > 1:32685/1‑182 (MQ=255) ctGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGcn < 1:106432/249‑2 (MQ=255) aCATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATATGCGCTCACGATTAAGCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCGCTTGCAGTCATCTTTGCTTCGCTCTAGCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGc < 1:277363/204‑1 (MQ=255) ggAAACCAAACACGTTTCGCTGGACCATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTAGCTCTATCCTCTGCCGCTATGCAAACATCCCg > 1:196703/1‑175 (MQ=255) gAAACCAAACACGTTTCGCTGGAACATATTGAACGAAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGc > 1:365461/1‑251 (MQ=255) aCCAAACACGATTCGCTGGAACATATTGAACGTAATCTGCTGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGt > 1:338602/1‑250 (MQ=255) cGTTTCGCTGGCACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGAGCGAAATAGGCGCTCACGATTAATATCTCCAAGCTTCCTACCATCGCGGAGGACGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAAAATCCCGTCTCCCTATCGCCATCCAACAGGCCGtt > 1:308157/1‑191 (MQ=255) cGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAACTAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGACGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCg > 1:71413/1‑251 (MQ=255) cGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGc < 1:17102/200‑1 (MQ=255) anNGAACGTNNTCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTg < 2:32685/99‑1 (MQ=255) gTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCTGAGTAAGTCACCTCTTGCAGTCATCTTttc < 1:360570/90‑1 (MQ=255) gTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGTCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTccgc > 1:415440/1‑251 (MQ=255) ntAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGaaa > 1:258048/2‑169 (MQ=255) aCTGCGCGAAATAGGCGCTCACGATTAATCTCACCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAAc > 1:143685/1‑200 (MQ=255) ggCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGaa > 1:5072/1‑250 (MQ=255) gcgcTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCGGAGCCAAAACTCTCTTACACCCAGCGCgg < 1:118336/221‑1 (MQ=255) ngATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCGGAGcc > 1:264889/2‑190 (MQ=255) cGNNNNNTCCNCCCAAGCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGaaa < 2:258048/144‑1 (MQ=255) aTCTCCCCAATCTTCCTCCCATCGGCGAGGAAGTCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCg < 1:206402/75‑1 (MQ=255) gCTTCCTCCCATCGCGGAGGAAGTCACCTCTTGCAGTCATCTTTTCTGCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCGGGCTGTAAAGCTATGAAATGCGCCTCAATCCCg < 1:122594/251‑1 (MQ=255) | CTGGGTAACGCCAACACCTTCTGGGTGTATGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATAGGCGCTCACGATTAATCTCCCCAAGCTTCCTCCCATCGCGGAGGAAGCCACCTCTTGCAGTCATCTTTTCTTCGCTCTATCCTCTGCCGCTATGAAAACATCCCGTCTCCCTATCGCCATCCAACAGGCCGTTATGCGTCGCCTGCGGGAAAAACTCGCCCAGGCCAACCTGAAGCTAGGGCGTAACTACCCGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCG > NC_000913/3089517‑3089938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |