| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,091,006 | +C | coding (660/708 nt) | endA → | DNA‑specific endonuclease I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,091,005 | 1 | . | C | 92.9% | 32.6 / ‑3.4 | 14 | coding (659/708 nt) | endA | DNA‑specific endonuclease I |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (9/4); total (9/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGAAGGCCAGTACGGTCAATGCGCCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCA‑GGG‑CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATG > NC_000913/3090777‑3091203 | cccgcccgtcgtacgcatcatttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgatgccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaagaaccatctgaactagcattaactgtcctgatctggctgatttcataccaaaGGTGCA‑GGGCCAATCATAACCCGTatgtgn < 1:86846‑M2/30‑2 (MQ=255) gctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCt > 1:337126‑M2/160‑251 (MQ=255) ccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTCACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg > 1:159705‑M2/150‑251 (MQ=255) tcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgatgtgttcactgcggtgaacagctggttgcgacataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACcgc > 1:211959‑M2/141‑251 (MQ=255) gccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCATGGC‑CAATCATAACCCTTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCttttt < 1:143904‑M2/82‑1 (MQ=255) gtggcgaggccgtctatcgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGc < 1:20625‑M2/41‑1 (MQ=255) nnctgtgtnnactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGG‑c < 2:14520‑M2/10‑1 (MQ=255) cgctgtgttcactgcggtgaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGG‑c > 1:14520‑M2/89‑98 (MQ=255) tnngagctgnntgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTAtgtg < 2:30035‑M2/29‑1 (MQ=255) gaacagctggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcagaccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACAGTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATTCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGcc < 1:359132‑M2/181‑1 (MQ=255) ggttgcgaaataaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTAtgtg > 1:30035‑M2/63‑91 (MQ=255) cgaaatcaccatctgaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCAATCATCACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAAc > 1:96928‑M2/58‑145 (MQ=255) gaaataaccatctgaactatcaggaactttcctgctctggctgattgcatacaaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCCGGCGCGaa > 1:391874‑M2/57‑107 (MQ=255) gaactatcaggaactttcctgatctggctgattgcataccaaaGGTGCA‑GGGCCCATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGACCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGCCGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGCACCACTGACCAGCCATTCTCACATCGCGCTTTGCGACGATg > 1:377487‑M2/44‑251 (MQ=255) ggctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTCACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTCCCACCGCGTgggg > 1:432256‑M2/19‑135 (MQ=255) ctgattgcataccaaaGGTGCA‑GGGCCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGACAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAc > 1:202982‑M2/17‑115 (MQ=255) | GTGAAGGCCAGTACGGTCAATGCGCCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCA‑GGG‑CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTGACCAGCCATTCTCACATCGCGCTTTGCGAAGATG > NC_000913/3090777‑3091203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |