mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| JC JC | 1,995,620 | IS5 (–) +4 bp | intergenic (‑261/‑32) | uvrY ← / → yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC | 2,535,178 | Δ24 bp | coding (1113‑1136/1728 nt) | ptsI → | PTS enzyme I |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| MC JC | 4,583,270 | 3543 bp→81 bp | [hsdR] | [hsdR] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503–1979269 | 1979392 | 124–890 | 116 [1] | [0] 119 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 4047917 | 4049788 | 1872 | 30 [28] | [29] 31 | [polA] | [polA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 28 (0.300) | 65 (0.750) | 43/554 | 0.7 | 66.8% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 38 (0.440) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 30 (0.330) | 44 (0.510) | 31/554 | 1.5 | 57.0% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 38 (0.440) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 141 (1.560) | 80/578 | 0.0 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978502 | 1 (0.010) | 70 (1.270) +117 bp |
39/352 | 0.1 | 99.2% | intergenic (‑305/+16) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| ? | NC_000913 | = 2070273 | NA (NA) | intergenic (‑93/‑4) | insC3/yoeA | IS2 insertion element repressor InsA/TonB‑dependent receptor plug domain‑containing protein YoeA | |||||
| * | ? | NC_000913 | 1979393 = | 0 (0.000) | 119 (1.300) | 69/584 | 0.1 | 100% | intergenic (‑178/‑360) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | 2068941 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||