mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| JC JC | 1,995,620 | IS5 (–) +4 bp | intergenic (‑261/‑32) | uvrY ← / → yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| MC JC | 4,583,270 | 3543 bp→81 bp | [hsdR] | [hsdR] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979392 | 890 | 121 [0] | [1] 165 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423817–3424444 | 3424444 | 1–628 | 34 [30] | [32] 35 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 32 (0.310) | 93 (0.940) | 63/552 | 0.2 | 74.6% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 33 (0.330) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 38 (0.360) | 69 (0.700) | 46/552 | 0.8 | 66.7% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 33 (0.330) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 78 (1.250) +117 bp |
45/350 | 0.1 | 100% | intergenic (‑305/+16) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| ? | NC_000913 | = 2070273 | NA (NA) | intergenic (‑93/‑4) | insC3/yoeA | IS2 insertion element repressor InsA/TonB‑dependent receptor plug domain‑containing protein YoeA | |||||
| * | ? | NC_000913 | 1979393 = | 0 (0.000) | 164 (1.580) | 80/582 | 0.1 | 100% | intergenic (‑178/‑360) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | 2068941 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||