New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1299499 =	NA (NA)	11 (1.020)	10/280	0.1	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	1300694 =	0 (0.000)					intergenic (+147/‑488)	insH21/oppA	IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTG  >  NC_000913/1300473‑1300937                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                    gccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggaccagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgattcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATtgt                                                                                                                                                                                                                        >  1:281441‑M2/222‑251 (MQ=255)   caggttttaccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATtgtg                                                                                                                                                                                                                       <  1:248749‑M2/31‑1 (MQ=255)                 gggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaactctcttttctggtctgacggcgcttactgctgaattcactgtcgacgaaggaaagttgatgactcatgatgaaccctgttctatggccccagatgacaaccatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCaa                                                                                                                                                                                                                                       >  1:136116‑M2/206‑220 (MQ=255)                            ctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTc                                                                                                                                                                                                                 <  1:231295‑M2/37‑1 (MQ=255)                                                     catggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAGCTGTAATCAGAAAAGATAGACAGGCTTAGCCAAtc                                                                                                                                                                    <  1:91498‑M2/82‑1 (MQ=255)                                                                ntgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTg                                                                                                                                                                                                                                    >  1:80336‑M2/159‑176 (MQ=255)                                                                                          cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAAGTAGTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAgg                                                                                                                                  <  1:264898‑M2/116‑1 (MQ=255)                                                                                                  gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcctgatgaaccctgttctatgcctacagatgacaaaaatgatctcatatcagggacttgttcgcaccttccCTAACTAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCa                                                                                                                        >  1:267058‑M2/125‑250 (MQ=255)                                                                                                                                                       catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAaat                                                                                                                                                                                                                                                >  1:212101‑M2/72‑77 (MQ=255)                                                                                                                                                                                   atgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTg                                      <  1:75242‑M2/208‑1 (MQ=255)                                                                                                                                                                                                   catatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTGAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAAc                      <  1:194833‑M2/224‑1 (MQ=255)                                                                                                                                                                                                                       aCCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTAttn  <  1:165265/251‑2 (MQ=255)                                                                                                                                                                                                                          ttCCCTAAATAATAATCAATTGTTAANTTATTGNNCANTTCACTACTGGAACTGTAANCANNNANNNTNGACATNCTNNGCCAATCTCNATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCNGATACGGTCNNTAAAAGAGAATTGCTTAACAANTTTNNANNANGTanggn                                                         >  2:63452/1‑189 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                    CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTG  >  NC_000913/1300473‑1300937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.