New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2259080	0 (0.000)	21 (1.800)	18/304	0.0	100%	coding (217/942 nt)	psuK	putative pseudouridine kinase
	?	NC_000913	2288919 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

GTGCCTCTTCACTGATATTACAGTCCGCGACAATGACCTTTGCCCTCTGAATAAATTCACCGTGCTGTGCGAGATATTCAGCTGTAATAGCGTTGCTAATATTCATGTCATTTATAGCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGCAGCGATTGACCATAAAAATCACTGCCTACGGCGCTCAGTAGCCAGGCTTTGTTACCCAGCAACGCCAGGTTTTGTGCAATATTGCGCCCTACTCCACCAGGCGTAAATTTTATTTTACCTGGATTTGAATCCGCATAATTTAATGATTCATGTGAATATCCGGCGACATCAATATTCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAA  >  NC_000913/2258852‑2259315                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                            gTGCCTCTTCACTGATATTACAGTCCGCGACAATGACCTTTGCCCTCTGAATAAATTCACCGTGCTGTGCGAGATATTCAGCTGTAATAGCGTTGCTAATATTCATGTCATTTATAGCAACCAGCATTTCACCGGTATTATCAAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcgggg                                                                                                                                                                                                                        >  1:89428‑M1/1‑229 (MQ=255)                            cgACAATGACCTTTGCCCTCTGAATAAATTCACCGTGCTGTGCGAGATAGTCAGCTGTAATAGCGTGGCTAATAGTCATGTCATTTATAGCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATTAGGTGTGTATCGACATAAACGCCAGATTGACTTGTGTGCGTTAGtgaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt                                                                                                                                                                                            <  1:132299‑M1/251‑50 (MQ=255)                               cAATGACCTTTGCCCTCTGAATAAATTCACCGTGCTGTGCGAGATATTAAGCTGGAATAGCGTTGCTAATATTCATGTCATTTATAGCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCCCAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggcggactcagtcatttcat                                                                                                                                                                                         >  1:253445‑M1/1‑199 (MQ=255)                                          gCCCTCTGAATAAATTCACCGAGCTGTGCGAGATATTCAGATGTAATACCGTTGCTAACATTCATGTCATTTATAGCAACCAGCATTTCACCGGTATTATTGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACACTCCGGCATTTATCGACCTAAACGCCAGCATGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtaatttaatttcttcatgtt                                                                                                                                                                              >  1:131401‑M1/1‑188 (MQ=255)                                                                                               gCTAATATTCATGTCATTTCTAGCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattta                                                                                                                                 >  1:78156‑M1/1‑135 (MQ=255)                                                                                                        caggtcaTTTATANCAACCAGCATTTCACCGGTATTATCGAGTAANGNTAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACNTAAACGCCAGNTTGNNTGGTNTNCNTTAGggaaggtgcgaataagcggggaaatncttctcggctgactcagtcatttnnttnnntcnngtttt                                                                                                                                                                            <  2:200140‑M1/188‑66 (MQ=255)                                                                                                        cATGTCATTTATAGCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGAACAATCAGGAATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg                                                                                                                                                                            >  1:200140‑M1/1‑126 (MQ=255)                                                                                                             cATTTATAGCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGAACAATCAGGCATTTATCGACATCCACGCCAGATTGCTTGGTTTGCGTTAGggaaggagcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgtttttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattta                                                                                                             >  1:118921‑M1/1‑121 (MQ=255)                                                                                                                     gCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaan                                                                                                                                                                                                                                        <  1:169483‑M1/118‑6 (MQ=255)                                                                                                                     gCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGACAGATTGATTGGGTTGCGTTAGggaag                                                                                                                                                                                                                                        >  2:169483‑M1/1‑113 (MQ=255)                                                                                                                                            atCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctc                                                                            <  1:124425‑M1/251‑162 (MQ=255)                                                                                                                                               gAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                                                                                                                <  1:35979‑M1/164‑78 (MQ=255)                                                                                                                                                                               ncgGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggt                                         >  1:171770‑M1/2‑55 (MQ=255)                                                                                                                                                                               ccGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttgttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggt                                         <  1:124745‑M1/251‑197 (MQ=255)                                                                                                                                                                                 ggCACAATCAGGCATTTATCGACATAAACGCCAGAGTGAGTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattgcttcatgtttgag                                                                                                                                                                          <  1:187172‑M1/120‑68 (MQ=255)                                                                                                                                                                                  gCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttgg                                      <  1:207799‑M1/251‑200 (MQ=255)                                                                                                                                                                                                          aaaCGCCAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggcaattattctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcacactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcaccagtt              >  1:245356‑M1/1‑28 (MQ=255)                                                                                                                                                                                                               ccAGATTGATTGGTTTGCGTTAGggaaggtgcgaatnagcggngnanntcnnctcggctg                                                                                                                                                                                                        <  2:179489‑M1/60‑38 (MQ=255)                                                                                                                                                                                                               ccAGATTGATTGGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg                                                                                                                                                                                                        >  1:179489‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                      gattgGTTTGCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtttt  <  1:3894‑M1/251‑236 (MQ=255)                                                                                                                                                                                                                               gCGTTAGggaaggtgcgaagaagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttggagccgatgttttctcccggaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcg                                                                                                        <  1:131340‑M1/140‑134 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                            GTGCCTCTTCACTGATATTACAGTCCGCGACAATGACCTTTGCCCTCTGAATAAATTCACCGTGCTGTGCGAGATATTCAGCTGTAATAGCGTTGCTAATATTCATGTCATTTATAGCAACCAGCATTTCACCGGTATTATCGAGTAATGATAAATAACTCGACGTATTTTCTCCCGGCACAATCAGGCATTTATCGACATAAACGCCAGATTGATTGGTTTGCGTTAGCAGCGATTGACCATAAAAATCACTGCCTACGGCGCTCAGTAGCCAGGCTTTGTTACCCAGCAACGCCAGGTTTTGTGCAATATTGCGCCCTACTCCACCAGGCGTAAATTTTATTTTACCTGGATTTGAATCCGCATAATTTAATGATTCATGTGAATATCCGGCGACATCAATATTCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAA  >  NC_000913/2258852‑2259315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.