New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 66632	0 (0.000)	11 (0.960)	7/300	0.3	100%	intergenic (‑82/+203)	araD/araA	L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase
	?	NC_000913	75923 =	0 (0.000)					coding (1377/1656 nt)	sgrR	DNA‑binding transcriptional dual regulator SgrR

CACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAG  >  NC_000913/66431‑66873                                                                                                                                                                                                          |                                                                                                                                                                                                                                                  cacaAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTATGTTTTGGCAGCGCCAGGTTGGCCTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatn                                                                                                                                                                                                   <  1:223165‑M1/250‑49 (MQ=255)                              cgcTGACGTTGCCCCATGTGAGCGTGACCAGGTTATGTTTTGGCAGCGCCAGGTTGGCCTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttn                                                                                                                                                                     <  1:69533‑M1/251‑79 (MQ=255)                                                                       ggCAGCGCCAGGTTGGCCTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccagcgtgacctggtgacttgccagaatctgctgcatgatc                                                                                                                             <  1:254647‑M1/250‑119 (MQ=255)                                                                                      ncctctaCTACCCGGAGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGATTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccagcgtgacctggtgacttgccagcatctgctgcatgatcccggcaatcacccgat                                                                                                             >  1:70121‑M1/4‑117 (MQ=255)                                                                                                      gTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGAGCCAGCGTaaagttggcgctgttaagcaagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccagcgtgacctggtgacttgccagaatctgctgcatgatccaggcaatcacccgatgctcactgtgatcctt                                                                                             >  1:9633‑M1/1‑101 (MQ=255)                                                                                                                                              gcgcTTTGCTTATCCGTCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccagcgtgacctggtgacttgccagaatctgctgcatgatcccggcaatcacccgatgctcactgtgatcctgataaaaggttagggtgaggctttccaggccagccggtttt                                                     <  1:9525‑M1/251‑191 (MQ=255)                                                                                                                                                   ttGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccagcgtgacctggtgacttgccagaatctgctgcatgatcccggcaatcacccgatgctcactgtgatcctgataaaaggttagggtgaggctttccaggccagccggtttttcnc                                                 <  1:216184‑M1/250‑195 (MQ=255)                                                                                                                                                                                 gtAGGCCTGATAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccagcgtgacctggtgtcttgccagaatctgctgcatgatcccgtcaatcacccgatgctcactgtgatcctgataaaaggttagggtgaggc                                                                         <  1:234070‑M1/196‑171 (MQ=255)                                                                                                                                                                                           tAAGACGCGCCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatatccagcgtgacctggtgacttgccagaatctgctgcatgatcccggcaatcacccgatgctcactgtgatcctgataaaatgttagggtgaggctttccaggccagccggtttttcgctctttatggtgcgggcatggtgccaacgga                   <  1:277412‑M1/240‑225 (MQ=255)                                                                                                                                                                                                 gcgcCAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccagcgtgacctggtgacttgccagaatctgctgcatgatcccggcaatcacccgatgctcactgtgatcctgataaaaggttagggtgaggctttccaggccagccggtttttcgctctttatggtgcgggcatggtgccaacgggggagcagtccataagcc  >  1:19001‑M1/1‑10 (MQ=255)                                                                                                                                                                                                    ccAGCGTaaagttggcgctgttaagccagatatcgctctcgatctctccttcatgccactgatcgtagctgatctctttgatttccggcgtgacctggtgacttgccagaatctgctgcatgatcccggcaatcacccgatgctcactgtgatcctgataaaaggttagggtgaggctttccaggccagccggtttttcgctctttatggtgcgggcatggtgccaacgggggag               <  1:276539‑M1/235‑229 (MQ=255)                                                                                                                                                                                                          |                                                                                                                                                                                                                                                  CACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAG  >  NC_000913/66431‑66873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.