| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | 1 bp→TG | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,454 | 1 | . | T | 100.0% | 32.7 / NA | 14 | intergenic (+588/+168) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (6/8); total (6/8) | |||||||||||
| * | NC_000913 | 3,560,455 | 0 | C | G | 100.0% | 40.6 / NA | 14 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (6/8); total (6/8) | |||||||||||
CAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGG‑TGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACC > NC_000913/3560220‑3560683 || cAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCCGTGCGCGCGCTACCGCTTCCGGCGTGGTGACGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGG‑TGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGtttt > 1:423259/1‑251 (MQ=255) tgtTAGCAACGTGGAGATTGTGGGTGACAATGCGCAAATTGCTGTGATGGAGCAGTGCGTGCGCTGCCGCTTCCGGCGTGGGGCCGATATCGATAAACAGCGTCGTGCCATTGGGGAGTTGCTCCGCCACTTGGGGGGGGATGCGCTCTTTTTCTTCGGTCGGGG‑TGGCCTTGGGATCGGGCCACGGCGTGTTAACCTAACTGGAAGGCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGTTTTGCTc < 1:254405/250‑1 (MQ=255) tgGTGACAATGCGCAAATTGCTGTGATTGAGCATTGCGTGCGCTACCGCTTCCGGCTTGGGGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCCTCGGTCTGGG‑TGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcgcg < 1:233893/250‑1 (MQ=255) tgGTGACAATGCGCAAATTGCTGGGATGGAGCAGTCCGTGCGCTCCCGCTTCCGGCGGGGGGCCGATATCGAAAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTGTGCTGGCGAGGCGCTCTTTTACTTCGGTCTGGGGTGGC‑TTGCGATCGTGCCACGGTTTGTGAACCGATCTGGAAGGCAGCGCCTCACCTCCATGATGGTGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcgcg < 1:306055/250‑1 (MQ=255) gCTGTGATGGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTGCGGTCGGGG‑TGGCCTTGCGATCGTGCCACGGCGTGTTAACCAAACTGGAAGGCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGTTTTGc < 1:58950/208‑1 (MQ=255) tggtgCCGATATCGATAAACAGCGTCGAGCCACTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGG‑AGGCCTTGCGCTCGTGCCACGGCGTGCTACCCGCACTGGACGGCAGCGCCGCACCGCCATGATGGTGCAGCATCAGGTTTTGCTACGCCCGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGCAATGCTCTACCAGCTCTTCGGTACTGACATa > 1:260800/1‑250 (MQ=255) tccTTGCGATCGTGCCCCGGCGTGTTAACCGAACTTGAAGGCCGCGCCGCCCCGCCATGATGGTGCAGGATCCGGATTTGCTACGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTCCCAGATCTTCGGTACTGACATAACCCTGCTGCTTAACCAGTTCGCTAATACCGTTGAGACGTTGTGTTTGTTTCATTTATCAATCCCTGGAATTATTTTAGTTTTCGCGCAt > 1:69733/2‑251 (MQ=255) ccTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCAACGCCATGATGGTGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGACTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCg > 1:402617/1‑149 (MQ=255) ttGCGATCGGGCCACGGCTGGTAAACCGAACGGGAAGGCAGCGCCGCACCTCCATGCTGGTGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCTCGGCGAATAGTCTGCGTGCTGTCGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:171283/178‑1 (MQ=255) cACGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTg < 1:205210/108‑1 (MQ=255) tgtTAACCNANNNGNNAGGCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGTTTTGCTNCGCCAGCTCATTGAGNTc > 2:312852/1‑79 (MQ=255) tgtTAACCGAACTGGAAGTCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc < 1:312852/79‑1 (MQ=255) ngAAGGCAGCGCCGCACCGCCATGATGGTGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaaca > 1:89802/2‑230 (MQ=255) gCAGCCCCGCACCGCCATGATGGTGCAGGATCAGGTTTGGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAGCCCTGGTGTTTAACCAGTTCGATAAGACCGTGGTGATGTTGTGTTTGTTTCTTTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCAttn < 1:84731/213‑2 (MQ=255) gatggtgcAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAcc < 1:250173/228‑1 (MQ=255) gtgcAGGATCAGGTTTTGCTCCGCCAGCTCATTGCGGCCGAGGCGAATAGTCTGCGGGCTGCCGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCAGTTCGata > 1:202654/4‑124 (MQ=255) || CAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGG‑TGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACC > NC_000913/3560220‑3560683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |