| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,155,880 | C→T | L206L (CTC→CTT) | mdtB → | multidrug efflux pump RND permease subunit MdtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,155,880 | 0 | C | T | 94.7% | 44.1 / NA | 20 | L206L (CTC→CTT) | mdtB | multidrug efflux pump RND permease subunit MdtB |
| Reads supporting (aligned to +/- strand): ref base C (0/1); major base T (9/9); minor base G (0/1); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCGCCGGTTTACAGCAAAGTGAACCCGGCAGATCCGCCGATCATGACGCTCGCCGTCACCTCAACCGCCATGCCGATGACGCAAGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCGCCTACCAGAACGGCGCGCCAATTCGTCTGGGCGATGTCGCAACTGTAGAGCAAGGTGCAGAAAACAGCTGGCTCGGCGCGTGGGC > NC_000913/2155664‑2156113 | nccgccgGTTTACAGCAAAGTGAACCCGGCAGATCCGCCGATAATGACGCTCGCCGTCACCTCAACCGCCATGCCGATGACGCATGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCAtt > 1:82564/2‑250 (MQ=255) gTGAACCCGGCAGATCCGCCGATCATGACGCTCGCCGTCACCTCAACCGCCATGCCGATGACGCACGTGGAAGATATGGTGGAACCCCGCGTCGCGCAGCAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGCAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTc > 1:298054/1‑251 (MQ=255) cGGCAGATCCGCCGATCATGACGCTCGCCGTCACCTCAACCGCCATGCCGATGACGCAAGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCCGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAAACGTGCGCACCGCCATTACCgg > 1:24023/1‑229 (MQ=255) ggCAGATCCGCCGATCATGACGCTCGCCGTCACCTCAACCGCCATGCCGATGACGCAAGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGTGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCaaa > 1:441123/1‑249 (MQ=255) cTCGCCGTCACCTCAACCGCCATGCCGCTGACGCAAGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGgc > 1:383694/1‑207 (MQ=255) cGCCATGCCGATGACGCAAGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCgg > 1:163957/1‑239 (MQ=255) gCCATGCCGATGACGCAAGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCTGCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCcgc < 1:306382/251‑1 (MQ=255) gCCATGCCGATGACGCAAGGGGAAGATATGGGGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCcgc < 1:306363/251‑1 (MQ=255) cccATGCCGATGACGCAAGTGGAAGATAGGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTGCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCAAGCTTTCcgc < 1:306380/250‑1 (MQ=255) ccGATGACGCAAGTGGAAGATAAGGGGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGGGGGCCTGGTGACGCTTTCCGGCGGTCGGCGTCCGGCTGTTCGCGTGAAACTTAACGCTCAGGCGATTGCCGCGCTTGGGCTGACCTGCGAAACCGTACGCACCGCGATTACCGGCTCTAACGTTAACTCGGCAAAAGGAAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGa < 1:5230/251‑1 (MQ=255) gtggAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACCCTCAGGCGATTGCCGCCCTTGGCCTGTCCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCACAAGGCAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGt > 1:375546/1‑250 (MQ=255) tGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAAAGATCAGGCGATTGCCGCCCTTGGCCTGCCCAGCGAAACCGTGCGCACCGGCATTAACGGCGCTAACGTTAAATCGGCAAAAGGGAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCGCCTACCAGAACGGCGCGCCAATTCGTCTGGGc > 1:239776/1‑251 (MQ=255) gCTTCCCGGCGGTCAGCGTCCGGCTTTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCGTGGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCTCTGACGTTAACACGGCAAAAGGTAGCCGCGACGGCCCTTCCCGTGCGGTCACGCGTTCCGCGAACTACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCGCCTACCAGAACGGCGCGCCAATTCGTCTGGGCGATGTCg < 1:292156/251‑1 (MQ=255) tnNCGGCGGNNAGCGTACGGCTGTTCGCGCGAACCTTAACGCGCCGGCGTTTGCCGCCTTTGGCGTGTCAATCGAAACCGTGTGCACCGCCATTACCgg < 2:24023/99‑1 (MQ=255) gcggTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCGCCTACCAGAACGGCGCGCCACTTCGTCTGGGCGATGTCGCAACTGt > 1:262048/1‑250 (MQ=255) cGGCTGTTCGCGTCAAACTTAACGCTGAGTCGATTGCCGCCCTTGGCCTGACCAGCGAAGCCGTGCGCACCGCCATTACCGGCTCTAACGTTAACTCGGCAAAGGGTAGCCGCGACGGCCCTTCCCTTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCTCCTACCAGAACGGCGCGCCAATTCGTCTGGGCGATGTCGCAACTGTAGAGCAAGGTGCa < 1:255656/251‑1 (MQ=255) cAAACTTAACGCTCAGGCGATTGCCGCCCTTGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTGTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCGCCTACCAGAACGGCGCGCCAATTCGTCTGGGCGATGTCGCAACTGTAGAGCAAGGTGCAGAAAACAGCTggn < 1:48483/251‑2 (MQ=255) taccccTCAGGCGTTTGCCTCCCTTTGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCTCGAACGACCAGATGCACTCCGCCGAAGATTATCGCCAGCTAATCATCGCCTACCAGATCGGCGCTCCACTTCGTCTGGGCGATGTCGCAACTGTAGAGCAAGGTGCAGAAAACAGCTGGCTCGgc < 1:234934/245‑1 (MQ=255) ccaaGGCGATTGCCGCCCTTGGCCTGACAAGCGAAACCGTGCGCCCCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAAGCATCGCCTACCAGAACGGCGCGCCAATTCGTCTGGGCGATGTCGCAACTGTTGAGCAAGTTGCAGAAAACAGCGGGCTCGGCGCGTgg < 1:107150/248‑1 (MQ=255) gccgccCGCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCGCCTACCAGAACGGCGCGCCAATTCGTCTGGGCGATGTCGCAACTGTAGAGCAAGGTGCAGAAAACAGCTGGCTCGGCGCGTGGGc < 1:344704/242‑1 (MQ=255) | CCCGCCGGTTTACAGCAAAGTGAACCCGGCAGATCCGCCGATCATGACGCTCGCCGTCACCTCAACCGCCATGCCGATGACGCAAGTGGAAGATATGGTGGAAACCCGCGTCGCGCAGAAAATCTCGCAGATTTCCGGCGTCGGCCTGGTGACGCTTTCCGGCGGTCAGCGTCCGGCTGTTCGCGTCAAACTTAACGCTCAGGCGATTGCCGCCCTCGGCCTGACCAGCGAAACCGTGCGCACCGCCATTACCGGCGCTAACGTTAACTCGGCAAAAGGTAGCCTCGACGGCCCTTCCCGTGCGGTCACGCTTTCCGCGAACGACCAGATGCAATCCGCCGAAGAGTATCGCCAGCTAATCATCGCCTACCAGAACGGCGCGCCAATTCGTCTGGGCGATGTCGCAACTGTAGAGCAAGGTGCAGAAAACAGCTGGCTCGGCGCGTGGGC > NC_000913/2155664‑2156113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |