| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,397,802 | G→A | T274I (ACC→ATC) | uspE ← | universal stress protein E |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,397,802 | 0 | G | A | 92.3% | 27.3 / NA | 13 | T274I (ACC→ATC) | uspE | universal stress protein E |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/8); minor base C (1/0); total (5/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCCCGTTGGGAATTTATTTCCTTGGCGGCGAAGAGCAGTAAGTAAAAAATAGGCCCGATAACTCGGGCCTTGTCAGTTATTGAAGAGTCGTTAATCGTCTTCTTCGTCATCCAGTTCAACGGGTGTCTGATACTGGTCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATGATCAATCACCTGTTCCGCCGTGTTGCCGAGGAATGCTGCTGAAATACCGGTGCGTCCTACCGTGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCTTCTGGCAGACCTTTTTCTACGTGCGTCATGTTTTCATTAATGCCGAATTTCTGCCGCAGGGCTTTCATTGCCAGCAAATGTTGCCCACGAATGGCATCGTTATAAACGCTCGGGTCAAATTCCGGCAGTTCAATCGCGATATTAATTGGCGTTACCGG > NC_000913/1397581‑1398028 | aTCCCGTTGGGAATTTATTTCCTTGGCGGCGAAGAGCAGTAAGTAAAAAATAGGCCCGATAACTCGGGCCTTGTCAGTTATTGAAGAGTCGTTAATCGTCTTCTTCGTCATCCAGTTCAACGGGTGTCTGATACTGGTCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATGATCAATCACCTGTTCCGCCGTGTTGCCGAGGAATGCTGCTGAAATACCGATGCGTCCTACCGTGCCCAGAACCACAATc < 1:133679/251‑1 (MQ=255) tcggttctgAAGAGCATAAAGAAAAAAAGAGCCCCTATACCTCGGGCCTTGTCAGTTATTGAAGATGCTTTAATCGTCTTTTCCGACACCCAGTTCAAGGGGGGTTGGATACTGGGCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATAATCAATCACCTGTTCCCCCGGGTTGCCAAGAAAGTCGGCTGAAATACCGATGCGTCCCACCGTGCCCAAACCCACAACCCCCGCCTGTAAGTGCTCCGcc < 1:301197/242‑1 (MQ=255) gAAGAGCAGTAAGTAAAAAATAGGCCCGATAACTCGGGCCTTGTCAGTTATTGAAGAGTCGTTAATCGTCTTCTTAGTCATCCAGTTCAACGGGTGTCTGATACTGGTCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATGATCAATCACCTGTTCCGCCGTGTTGCCGAGGAATGATGCTGAAATACCGATGCGTCCTACCGTGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAgg > 1:328687/1‑250 (MQ=255) aagtaagtaAAAAATAGGCCCGATAACTCGGGCCTTGTCAGTTATTGAAGATTCGTTAATCGTCTTCTTCGTCATCCAGTTCAACGGGTGTCTGATCCTGGTCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATGATCAATCCCCTGTTCCGCCGTGTTGCCGAGGAATGCTTCTGAAATCCCGATGCGTCCTCCCGTGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCAcn < 1:133088/250‑2 (MQ=255) cGGGCCTTGTCATTTATTGAAGAGTCGTTAATCGTCTTCTTCGTCATCCAGTTCAACGGGTGTCTGATACTGGTCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATGATCAATCCCCTGTTCCGCCGTGTGGCCGAGGAATGCTGCTGAAATACCGATGCGTCCTACCGTGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCTTCTGGCAGACCTTTTTCTACGTNc < 1:347754/250‑1 (MQ=255) gttttcttcGTCATCCAGTTCAACGGGTGTCTGATACTGGTCAGGTTTAAGGACCGGCAGGTCGCAGCGAAGATGATCAATCACCTGTTCCGCCGTGTTGCCGAGGAATGCTGCTGAAATACCGATGCGCCCTCCCGGGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCTTCTGGCAGACCGTTGTCTACGNg < 1:350403/213‑1 (MQ=255) ggTGTCTGATACTGGTCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATGATCAATCACCTGTTCCGCCGTGTTGCCGAGGAATGCTGCTGAAATACCGATGCGTCCTACCGTGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCTTCTGGCAGACCTTTTTCTACGTGCGTCATGTTTTCATTAATGCCGAATTTCTGCCGCAGGGCTTTCATTGCCAGCAAATGTTg > 1:120691/1‑251 (MQ=255) gATACTGGTCAGTTTTAATGACCATCAGGTCGCACCGAAGATGACCAATCACGGGTTCCGCGGTTTGGCCGAGGAATGCTGCGGAAATCCCGATGCGTCCTACCGTCCCCAAAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCGTCTGGCAGACCGTTTTCTACGTGCGTCAGGTTTTCATGAATGCCGAATTTCTGCCGCAGGGCTTTCATTGCCAGCAAATGTTGCCCAc < 1:307335/249‑1 (MQ=255) gACCAGCAGGGCGCAGCGAAGATAATCAATCACCTGTCCCGCCGTGTTGCCGAGGAATGCTGCTGAAATACCGATGCGTCCTACCGTGCCCAGAACCACTTTCTCCGCCTGTAAGTGCTCCGCCAAATCAgn < 1:114679/132‑2 (MQ=255) agcagGTCGCAGCGAAGATGATCAATCACCTGTTCCGCCGTGTTGCCGTGGAAAGCTGCTGAAACACCGCTGCGTCCTACCGTGCCCAGAACCACAATACCCGCATGTAAGTACTCCGCCCAATCAGGa > 1:421914/1‑129 (MQ=255) gcagGTCGCAGCAAAGATAAACACTCCCTTGTCCCGCCGTGTTGCCGAGGAAGGCTGCTAAAATCCCGATGCTCCCTCCCGTCCCCAAACCCAAAACCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCTTCTGTCAGACCTTTTTCTACGTGCGTCATGTTTTCATTAATGCCGAATTTCTGCCGCAGGGCTTTCATTGCCAGCAAATGTTGCCCACGAATGGCATCGTTATAAACGCTCggg < 1:366396/251‑1 (MQ=255) ccGAGGGATGCTGCTGAAATACCGATGAGTCCTACAGTGAACAGAACCACAATCCCAGCCTGTAAGTGCACCGCCAAATCAGGAATCACCTCTTCTGGCAGACCTTTTTCTACGTGCGTCATGTTTTCATTAATGGCGAATTTCTGCCGCAGGGCTTTCCTTGCACGCAAATGTTGCCCACGAATGGCATCGATATAAACGATAGGGTCCAATTCCGGCAGTTCAATCGCGATATTAATTGGCGTTACCgg > 1:448142/1‑251 (MQ=255) aTACCGATGCGTCCTACCGTGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCTTCTGGCAGACCTTTTTCTACGTGCGTCATGTTTTCATTAATGCCGAATTTCTGCCGCAGGGCTTTCATTGCCAGCAAATGTTGCCCACGAATGGCATCGTTATAAACg > 1:33631/1‑183 (MQ=255) | ATCCCGTTGGGAATTTATTTCCTTGGCGGCGAAGAGCAGTAAGTAAAAAATAGGCCCGATAACTCGGGCCTTGTCAGTTATTGAAGAGTCGTTAATCGTCTTCTTCGTCATCCAGTTCAACGGGTGTCTGATACTGGTCAGGTTTAATGACCAGCAGGTCGCAGCGAAGATGATCAATCACCTGTTCCGCCGTGTTGCCGAGGAATGCTGCTGAAATACCGGTGCGTCCTACCGTGCCCAGAACCACAATCCCCGCCTGTAAGTGCTCCGCCAAATCAGGAATCACCTCTTCTGGCAGACCTTTTTCTACGTGCGTCATGTTTTCATTAATGCCGAATTTCTGCCGCAGGGCTTTCATTGCCAGCAAATGTTGCCCACGAATGGCATCGTTATAAACGCTCGGGTCAAATTCCGGCAGTTCAATCGCGATATTAATTGGCGTTACCGG > NC_000913/1397581‑1398028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |