| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,186,294 | G→A | A151T (GCG→ACG) | pepT → | peptidase T |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,186,294 | 0 | G | A | 88.2% | 31.0 / ‑5.7 | 17 | A151T (GCG→ACG) | pepT | peptidase T |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (7/8); minor base C (0/2); total (7/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGGATTGCAGCGGCAAAAATGTGAATCCGCAAATTGTTGAAAACTATCGCGGTGGCGATATTGCGCTGGGTATCGGCGATGAAGTTTTATCACCGGTTATGTTCCCGGTGCTGCATCAGCTACTGGGTCAGACGCTGATTACCACCGATGGTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGC > NC_000913/1186090‑1186523 | ccGGATTGCAGCGGCAAAAATGTGAATCCGCAAATTGTTGAAAACTATCGCGGTGGCGATATTGCGCTGGGTATCGGCGATGAAGTTTTATCACCGGTTATGTTCCCGGTGCTGCATCAGCTACTGGGTCAGACGCTGATTACCACCGATGGTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTcn < 1:270254/251‑2 (MQ=255) atatTGCGCTGGGGATCGGCGATGAAGTTTTATCACCGGTTATGGTCCCGGTGCTGCATCAGCTACTTGGTCAGACGCTGATTACCTCCGATGGTAAAACCTTGTTTGGTGCCGATGTCAAAGCATGTATTGCAGAAAGCATGACCCCGCTGGCGGTATTGCAAGAGAAAAAAATTCCGCAATGTGATAGGCGCGTCTCCTTTACCCCGGATGAAGAAGTGGGTAAATGGGCGAAACATTTTGATGTTGAc < 1:229316/251‑1 (MQ=255) gcgcTGGGTTGCGGCGATGAAGTTTTGTCACCGTTAATTTTCCCGGTTCTGCATCAGCTACTTGGTAGGACGCTGATTACCACCGATGGTAAAGCCTTGTTAGGTGCCCTTGAGAAAGCAGGTATTGCAGAAATCATGACCCCGCGGGCGTTAGTGCAACAGAAAAAAATTCCGCATGGTGGTATTCGCGTCTCGTTTTCCCCGGATGAAGAAGTCGGCAAAGGGGCGAAACATTTTGATGTTGACGCCt < 1:76326/250‑1 (MQ=255) gAAGTTTTATCACCGGTTATGTTCCCGGTGCTGCATCAGCTACTGGGTCAGACGCTGATTACCACCGATGGTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATCTTCGCGTCGCCTT‑ACACCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCt > 1:96771/1‑248 (MQ=255) gTTATGTTCCCGGTGCTGCATCAGCTACTGGGTCAGACGCTGATTACCACCGATGGTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGTATTGCAAc < 1:19236/127‑1 (MQ=255) aGCTACTGGGTCAGACGCTGATTACCACCGATGGTAAAACCTTGTTAGGTGCCGATGCCCACGCAGGTATTGCAGAAATCATGACAACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCAt > 1:186725/1‑122 (MQ=255) ggTNAAACCTTGTTAGGTGCCGATGACAAAGCAGGTNTTGNNGAAATCNNGACCACGNNGNCGGTATTGc < 2:362890/70‑1 (MQ=255) ggTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGTATTGc > 1:362890/1‑70 (MQ=255) gTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGc < 1:217494/200‑1 (MQ=255) gTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAat > 1:25573/1‑245 (MQ=255) gaGGTGCCGAGGACAAAGCAGGTAGTGCAGAAATCATGACCACGCTGGCGGTATTGAAACAGAAAAAAATTCCGCATGGTGATAGTCGCGTCGCCTTTACCCCGGATGAAGAAGTGTGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGAGGCCCGCTGGGCTTACACGGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTc < 1:171789/229‑1 (MQ=255) gCCGATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGGATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCTTCGCCTTTACCCCTGATGAAGAAGTGGGCAAAGGGGCGAAACAGTTTGATGTTGACGCCTTCGATGCCCGCTggg < 1:301768/160‑1 (MQ=255) gATGACAAAGCAGGTATTGCAGAAATCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGAGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGCTGTTGACGCCTTAGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACACCGCGTCGGTCAATATCAAAATTGCCGGTAACAATGTTc > 1:189059/1‑250 (MQ=255) gNCANAGCAGNTATTNCAGAAATCATGACCANGCTGGCGGTATTGCAACAGNNANAAATGNCGCAt < 2:186725/66‑1 (MQ=255) ggTATTGCAGAAATCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGTCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGTAGTTTGAAAACGTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGc < 1:180675/251‑1 (MQ=255) naaaTCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACCATg > 1:89537/2‑226 (MQ=255) tCATGACCACGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCaa > 1:158016/1‑199 (MQ=255) | CCGGATTGCAGCGGCAAAAATGTGAATCCGCAAATTGTTGAAAACTATCGCGGTGGCGATATTGCGCTGGGTATCGGCGATGAAGTTTTATCACCGGTTATGTTCCCGGTGCTGCATCAGCTACTGGGTCAGACGCTGATTACCACCGATGGTAAAACCTTGTTAGGTGCCGATGACAAAGCAGGTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGC > NC_000913/1186090‑1186523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |