| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 226,027 | C→T | noncoding (269/2904 nt) | rrlH → | 23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 226,027 | 0 | C | T | 92.9% | 40.3 / ‑4.4 | 28 | noncoding (269/2904 nt) | rrlH | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (12/14); minor base G (0/2); total (12/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-01 | |||||||||||
GCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGG > NC_000913/225826‑226232 | gCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcgc < 1:144762/251‑1 (MQ=14) cGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGCAAACCCAGTGTGTTTAGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATAAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGCAAGgcgcg > 1:57640/1‑249 (MQ=9) atGAACCGATATGACCGTGGATTTCCGAATGGGGAAACCCGGTGTGTTTCGACACACTATGATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTGCCCCGAAGAAAAGAAAGCAACCGAGGTTCCCCCAGTAGCTGCGAGCGAACGGGGAGGAGCCGAGAGCCTGAATCAGTGTGTGGGTTAGTGGGATCGTCTGGAAAGGAGCGCGATACAGGGTGAGAGCCCCGTa < 1:167526/250‑1 (MQ=11) ccGGCGATTTCCGAATGGGGAAACCCAGTTTGTTTCGACACACTATCATTAACTGAATCCAGAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCATTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAAtn < 1:49779/177‑2 (MQ=255) tCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGAGTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGTCGAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAggg < 1:219510/214‑1 (MQ=9) ctaaTGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTc > 1:408864/3‑251 (MQ=14) gtTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCtg < 1:290833/224‑1 (MQ=14) aTCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTc < 1:192616/250‑1 (MQ=14) cTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAgg < 1:350734/170‑1 (MQ=17) aaTCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAgtgtgtgtg < 1:413133/132‑1 (MQ=18) nnggNNNNNGAGNCGAACCGGGGGAACTGAAACAGCTAAGTAACCCGAGGAAAAGAAATCATCCGAGATTCCTCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAAGCAGTGTGTGTGGTAGGGGAAGCGTATGGaaa < 2:283034/144‑1 (MQ=11) aaTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAACTCAACCGAGATTCCCACAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTATTAGTGGAAGCGTCTGGAAAgg > 1:403871/1‑142 (MQ=11) gctggaCCGGNGGAACTGAAANAGCNNAGGANCNCNAGGAAAAGAAAGCAACCGAGATTCCCCCANTAGCGCCGAGCGAACGGGGAGGANNCTNNNGCNNGAATc < 2:339057/100‑1 (MQ=2) gctggaCCGGGGGAACTGAAACCTCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTgcctc > 1:339057/6‑101 (MQ=11) gAACCGGGGGAACTGAAACATCTAAGTACAACGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCgc > 1:354129/1‑159 (MQ=255) aaCATCTAAGGACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCTAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGATGAGTAGGGCGGGACACGTGGGATCCTGTCTGAATATGGGGGGACCATCCTCAAAGGc < 1:147591/231‑1 (MQ=255) cATCTAAGTACCCCGAGGAAAATAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGTGGAGGAGCCTAGAGCCTGAATCAGTTTGGGTGGTAGTGGAAGCGGCTTGAAAGGCGCGCGATACACGGTGACGGCCCCGTACACAAAAATGCACATGCTGTGa < 1:382539/165‑1 (MQ=11) ncccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg > 1:88099/2‑106 (MQ=18) nccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcccc > 1:278546/2‑129 (MQ=18) cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcccc < 2:278546/129‑1 (MQ=18) naaaGAAATCAACCGAGCTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTg > 1:109672/2‑250 (MQ=14) aaagaaagCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCt < 1:401518/149‑1 (MQ=12) aaaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATg < 1:94803/140‑1 (MQ=18) aaaGAAATCAACCGAGATTCCCCCAGNAGCGGCNNGCNAACGGGGAGGAGCCTAGAGNCTNNNTNNNTNTGTGTNTTNNTGGAAGCGTNTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATg > 2:94803/1‑140 (MQ=11) tCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCTAGCGCCTGAATCAGAGTGTGTGTTAGTGGAAGCGTCTGGAAAgga > 1:402971/1‑79 (MQ=11) cgaACGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACCTGCTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTg > 1:400714/1‑148 (MQ=12) aaCGGGGAGGAGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACATGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGATGAGTATGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGTACCATCCTCCAAGGCTAAATGCTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa < 1:329751/216‑1 (MQ=255) ggaggaGCCTAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAACAATGCACATGCTGTGAGCTCGCTGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAgg > 1:224542/1‑215 (MQ=9) | GCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGG > NC_000913/225826‑226232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |