| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,129,324 | C→T | L496L (CTG→TTG) | murJ → | lipid II flippase MurJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,129,324 | 0 | C | T | 88.9% | 14.2 / NA | 9 | L496L (CTG→TTG) | murJ | lipid II flippase MurJ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (1/7); minor base G (0/1); total (1/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAGGTATGTTACATATCATGCCGGAGTGGTCATTGGGTACCATGCCCTGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTACTTCGCTGCACTGGCGGTACTGGGCTTCAAAGTTAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGGTTGTTGAGGTCTGACCGTTCGCCCCATATAGCGTCGGTTCCTGATGC > NC_000913/1129153‑1129492 | cccGGCTGGATGGCGTTTCTGTTGCGTCGGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAGGTATGTTACATATCATGCCGGAGTGGTCATTGGGTACCATGCCCTGGCGTGTACTGCGTTTAATTGCGGTCGTGCTGGCGTGGATTGCCGCGTACTTCGCTGCATTGGCGGTACTGGGCTTCAAAGTTAAAGAATTTGc < 1:303237/206‑1 (MQ=255) tGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTTCTTTTATGTATGTTACATCTCAGGCCGGAGTGGTCATTGCGTACCATGCCCGGGCGTTTACTGCGTTTAATGGCGGGCGTGCTGGCGGGGAGTGCCGCGTACTTCGCTGCATTGGCGGTACTGGGCTTCAAAGTTAAAGAATTTGcc < 1:58022/201‑1 (MQ=255) gggCGGTACTGGGGATGTCTGGCGTGCTTTTAGGTTTTTTACATTTCAGTCCGGAGTGGTCATTGGGTACAATGCCCTGGGGTTTGCGGTGTTGAATGGCGGTCGGTCTGGCGGGGATTGCTGCGTTCTTCGTTGCAGTGGCGGTATTGGGCTTTAAAGTGAAAGAATTTGCCCGCCGGACGTTGTAACTATGCATCCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTAccgcc < 1:421621/250‑1 (MQ=255) ggCGTGCTTTTAGGTATTTTACATATCATGCCGGAGTTGTCATTGGGTACCATGCCCGGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTACTTCGCTGCATTGGCGGTACTGGGCTTCAAATTTAAAGAATTTGCCCGCCGGGCGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGATATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGGTTGTTGAgg < 1:407217/248‑1 (MQ=255) cATGCCNNAGTGGTCATTGGGTCCCATGCCCTGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTACTTCGCTGCATTGGc < 2:20500/96‑1 (MQ=255) cATGCCCTGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTTCTGCGCTGCATTGTCGGTTCTGGGCTTCAAAGTGAAATAATTTTCCCGCCTTACGGTGTAACAATGCATTCCGGCCTGCAGTGCATGCCGGAGATAATCTTCAGATCGAAATCGTGTTTGCTCTGCGATGAGTTGTTGGTGTCTGACCGTTCGCCCCATATAGCGTCGGTTCCTGATGc < 1:290712/236‑1 (MQ=255) gCGTTTAATGGCGGTCTTGCTGTCGGTGATTGCGGCGTACTTCGCTGCATTGGCGGTACTGGGCTTCAAATTTAAAGAATTTGCCCGCCGGACGCTGTAACAATGCATTCCGGCCTAAATAGCAAGCATGTGATAATCTTCAGATCGAAAGCTTTGTACCGCCGCGATGGGTTGTTGAGGTCTGa < 1:422072/185‑1 (MQ=255) gCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTACTTCGCTGCATTGGCGGTACTGGGCTTCAAAGTTAAAGAATTTGCCCGCCGGACGGGGTAACAATGCATTCCGGCCTGCAGTGCAGGCCTAAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGGTTGTTGAGGTCTGACCGtt < 1:405214/190‑1 (MQ=255) cGGGGATTGCCGCGTACTTCGCTGCATTGGCGGTACTGGGCTTCAAAGGTAAAGAATTTGCCCGCCGGACGGTGTCACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCCATggg > 1:249508/1‑148 (MQ=255) | CCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAGGTATGTTACATATCATGCCGGAGTGGTCATTGGGTACCATGCCCTGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTACTTCGCTGCACTGGCGGTACTGGGCTTCAAAGTTAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGGTTGTTGAGGTCTGACCGTTCGCCCCATATAGCGTCGGTTCCTGATGC > NC_000913/1129153‑1129492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |