| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,115,233 | C→T | M86I (ATG→ATA) | mdtG ← | efflux pump MdtG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,115,233 | 0 | C | T | 100.0% | 54.9 / NA | 21 | M86I (ATG→ATA) | mdtG | efflux pump MdtG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/11); total (10/11) | |||||||||||
CCGCCAGCCATTGGGCCGAGCAACGCACCACTAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGCATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGGCGACGATCAGGTTTCGTTTCCAGTTTATAGGGGTGTCATTTTC > NC_000913/1115003‑1115478 | ccgccAGCCATTGGGCCGAGCAACGCACCACGAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCTGCCCCATCAACACCATCGCGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGGTTTCGGCCTTTACg < 1:68538/251‑1 (MQ=255) ccgccTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATggn < 1:265107/251‑2 (MQ=255) tttATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATAcag < 1:422844/250‑3 (MQ=255) gtgtgGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGc < 1:301925/250‑1 (MQ=255) cATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGCCTCAAAATCTGCCAGATATTTTGTGCCAGCCCCATCACCACCATCACGATGCCCATGCCGAGGGCAGAGCGGCATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGACAACCCCAAAACGGTTAGGCTGTGGCCGAAAATAAAAATGTAATGCTGAAGACAATAACGGACCACATATTCAGGGCGGAGTGTCCGGTAACg > 1:170076/1‑251 (MQ=255) tGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAAGAGTATGAGTTTTCGGCCTGTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAATACAATACCGGACCACATATGCAGGGCGGAGTGACCGGTAACGCCAAgctg < 1:399831/250‑1 (MQ=255) ngnnaaancccGCCAAGTAACCCAAGAAGNNCCCGCAGGANCAAAAACTGCCAGATATGTTGTGCCAGCCCCATCAACACCATCACGATGCCCANGCCGAGGGCNNAGNGTAAGNGNNNGNNNTTNCGGCCTTTACGGTCGGCGANTCNNCCCCAANACGGTGAGGCGATGGCCGAAAATaaa < 2:95876/174‑1 (MQ=255) gggACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATaaa > 1:95876/1‑183 (MQ=255) cccAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAAAACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGCGTTTTCGGCCTTTACgg > 1:429384/1‑118 (MQ=255) aagaagCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAANACGNNNNNGcnnnnnn > 2:276278/1‑144 (MQ=255) ggATCAAAAACTGCCAGATATTTTGTTCCAGCCCCATCAACACCATCACGATGCCCATGCCGCGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAACCGGTGAGGCGATGGCCGAAAATAACAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTCACGCCAAGCTGCTCAACGTAGAGGGGTAAGACGGGCCTTACCAGCCTGa > 1:321279/1‑249 (MQ=255) naaaaCTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCgg > 1:45879/2‑193 (MQ=255) atTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGATTTTTCGGCCTTTACGGTCGGCGAGTcc < 1:373332/93‑1 (MQ=255) gNCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGCGGCACCGGTAAGAAAACAGCCt > 1:347257/1‑249 (MQ=255) gCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTAGGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGGGACCGGTAACTCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGCGGCACCGGTAAGAAAACAGCCTAg < 1:418954/251‑1 (MQ=255) gCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAAAAGTATGAGTTTTCGGCCTTTACGATCGGCGACTACACCACAAAACGGAGAGGCGATGGCCGAAAATAAAAATGAAATGATGAAGACAATACCGGCCCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGTGGCACCGGTAAGAAAACAGCCt > 1:219142/1‑249 (MQ=255) acCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGGCCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAATAAGGGCATTACCAGACTGAAGGCTGCACCGTTAAGAAAACAGCCTAGCCAGGCGACGATCAg < 1:387302/251‑1 (MQ=255) ccATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCANATANNNNnggnnnnnnnnnn > 2:276446/1‑144 (MQ=255) aTCACGATGCCCATGCCGAGGGCAGAGCGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGGCGACGATCAGgtn < 1:276278/251‑2 (MQ=255) gCCGAGGGCAGAGCGTAATAGTAGGAGTTTTCGGCCTTTACGGGCGGCGAGGCCACCCCAAAACGGTTAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGan < 1:41415/133‑2 (MQ=255) ncGTAATAGTATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAgg > 1:275971/2‑212 (MQ=255) aaTAGTATGAGTTTTCGGCCTTTACGGGCGGCGAGGCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGGCGACGATCAGGTTTCGTTTCCAGTTTATAGGGGTGTCAttttn < 1:276446/251‑2 (MQ=255) | CCGCCAGCCATTGGGCCGAGCAACGCACCACTAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGCATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGACTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGGCGACGATCAGGTTTCGTTTCCAGTTTATAGGGGTGTCATTTTC > NC_000913/1115003‑1115478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |