| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,061,935 | 0 | G | A | 92.9% | 29.1 / NA | 14 | S46N (AGC→AAC) | torD | trimethylamine‑N‑oxide reductase‑specific chaperone |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/8); minor base C (1/0); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.73e-01 | |||||||||||
AACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAGCGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTACAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTG > NC_000913/1061740‑1062126 | aaCGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACg > 1:236382/1‑248 (MQ=255) gTGCGAATATGTTCCCGCGTCGCAGGTGACATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGACAGTGCGCAGATGGATGCATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAAGGAGCTGGAAAAACGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTgg > 1:414522/1‑250 (MQ=255) gCAGGTGAAAACATGACCCCGCTGACAGCACAACAGATTGCCTGTGTTGACGCTGGGCAAGCGCAGTTTTGCTCCCGTGAGCGGGAGGATGAAAAACGGACGCAAACCGCCAGTGCGCAGAGGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCgg < 1:151892/251‑1 (MQ=255) cccACGCTGACAGAACAACAGTTTGCCGGTGTTGACGCCTGGCGAGCGCAGTTTTTTCCCCGTGAGCTGGACGATGAACAACGCACGCAAATCGCCAGTGCGCATATGGCTAATTGGTTGGCGTGGCTTAAAAACGAACCGCCTCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCtgatgan < 1:80916/250‑2 (MQ=255) ccACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTACCGTGAGCTGGACGATGAACAACTGACGCAAATCGCAAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGt > 1:381562/1‑157 (MQ=255) gACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACt > 1:374732/1‑142 (MQ=255) aTTGCCTGTGTTGTCGCCTGGCTAGCGCAGTTGTTCTCCCGGGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGTCTGAGTGGTTTTCGTGTCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATg < 1:309313/184‑1 (MQ=255) aTTGCCTGNGNNNANNCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAANTGACGCAAATCGCCANTGNGCAGNTGGNTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAACACGTATTGCCCCGCTGACAGTACGTTACGATg > 2:309313/1‑184 (MQ=255) ccTGGCTAGCGCAGTTGTTCCCCCGTGAGCGGGACAAGAAACACCGGAGCCAAATCGCCAGTGCGGAGAGGGTTGAATGTTTTGCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTTGAACTGGCCGCGGACGTTTGCGTCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTAc < 1:256289/251‑1 (MQ=255) gAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTAAAGGGTTTTGGTGGCAAAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCGGGAAAACCGTATTGCCACGCTGACAGTACGTGACGAGGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCGGCCGTATGCATCGGCCTACAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTg < 1:201286/250‑1 (MQ=255) gACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAACCGAACCGCCACTCACTGCGGCGGCGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTg > 1:173128/1‑136 (MQ=255) gTTTTCGTTGCCGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAAc < 1:119076/101‑1 (MQ=255) ttttCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGc < 1:102856/117‑1 (MQ=255) gTTGCGGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGtt < 1:196577/120‑1 (MQ=255) | AACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAGCGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTACAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTG > NC_000913/1061740‑1062126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |