| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,040,126 | 0 | G | T | 93.8% | 36.0 / NA | 16 | L277L (CTG→CTT) | appB | cytochrome bd‑II subunit 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (6/9); total (6/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGGCTTTGTACTGCTCGCCCAGGATGCTAACGGTCCTTCCAATCCGTTAATGAAACTGGTGGCAGTGCTACCTGGTGCCTGGATGAATAATTTTGTCGAGTCGCCCGTTTTGTGGATCTTCCCGCTGCTGGGATTCTTCTGCCCATTGCTGACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCATCATTGATGCAATTTGGCGTGATTTTCACGGCAGGCATCACGCTGTTCCCCTTTGTCATGCCGTCAAGCGTGAGTCCGATCTCCAGCCTGACGTTGTGGGACAGTACTTCCAGTCAGCTGACGCTGAGCATTATGTTGGTAATCGTG > NC_000913/1039975‑1040324 | aTGGCTTTGTACTGCTCGCCCAGGATGCTAACGGTCCTTCCAATCCGTTAATGAAACTGGTGGCAGTGCTACCTGGTGCCTGGATGAATAATTTTGTCGAGTCGCCCGTTTTGTGGATCTTCCCGCTGCTGGGAGTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGGGTGGGGATTTTTGATGGCATCATTGATGCAATTTGGCGTGATTTTCACTGCAGGCATCACGCTGTTc < 1:96004/251‑1 (MQ=255) gCTTTGTACTGCTCGCCCAGGATGCTAACGGTCCTTCCAATCCGTTAATGAAACTGGTGGCAGTGCTACCTGGTGCCTGGATGAATAATTTTGTCGAGTCGCCCGTTTTGTGGATCTTCCCGCTGCTGGGATTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCggn < 1:40865/181‑2 (MQ=255) gCTTTGTACTGCTCGCACAGGATGCTAACGGTCCTTCCAATCCGTTAATGAAACTGCCGGAAGTGCTACATGGTGCCTGGATGAATAATTTTGTCGCGTCGACCGTTTTGTGGCTCTTCCCGCTGCTAGGATTCTTCTGCCCATTGCTTACGGTGATGGCGATTTCTCGTGGTCGCCCGGGTCGGGGATTTTTGATGGCATCATTGATGCAATTTGGCGTg > 1:302750/1‑221 (MQ=255) gAAACTGGTGGCAGTGCTCCCNGNTGCCTGGATGAATAAGGTGGTCGAGTCGCCCGTTTTGTGGATCTTCCCNCTGCTGGGATNCTTNNGCCCNTNGNTTACGGTTATGGCGATTTATCGTGGTCGCNCGGGTTGGGGATTTTTGATGGCANNATNNNTGNNATTTg < 2:338706/167‑1 (MQ=255) gAAACTGGTGGCAGTGCTACCTGGTGCCTGGATGAATAATTTTGTCGAGTCGCCCGTTTTGTGGATATTCCCGCTGCTGGGATTCTTCTGCCCATTGCTTAAGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCATCATTGATGCAATTTg > 1:338706/1‑167 (MQ=255) ggtggCAGTGCTACCTGGTGCCTGGATGAATAATTTTGTCGAGTCGCCCGTTTTGTGGATCTTCCCGCTGCTGGGATTCTTCTGCCCAGTGCTTACGGTGATGGCGATTTATCGTGTTCGCGCGGGTTGGGGATTTTTGATg < 1:134329/142‑1 (MQ=255) ttgccaCCTGGTGCCTGGATGAATAATTTTGGTGAAGCGCCCGTTTTTTGGGTCCTCCCGCTGCTGGGATTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCATCATTGATg < 1:5683/142‑1 (MQ=255) gCCTGGATGCATAATTTTGTCGAGTCGCCCGGTTTGTGGATCTTCCCGCTGCTGGGATTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGAGGGCATCATTGATGCAATTTGGAGTGATTTTCACg > 1:96301/1‑156 (MQ=255) ggacgAATAATTTTGTCGAGTCGCCCGTTTTGCGGATCGTCTCGCTGCTGTGATGCTTCTGCTCAATGCTTACTTTGATGGCGATTTAGCTGGGTCGCCCGGGTTGGGTATTTTTGATGGCATCATTg < 1:172783/124‑1 (MQ=255) ntGNCGAGTNGCCCNTTTTGTGGATCTTCCNGCTGCTGGGATTCTTCTGCNNANTGCTGNCGGTg < 2:174510/64‑1 (MQ=255) cccGTTTTGTGGATCTTCCCGCTGCTGGGATTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCATCATTGATGCAATTTGGCGTGATTTTCACGGCAGGCATCACGCTGTTCCCCTTTGTCATGCCGTCAAGCGTGAGTCCGATCTCCAGCCTGACGTTGTGGGACAGTACTTCCAGTCAGCTGACGCTGAGCATTATGTTGGTAATCGTg < 1:143755/246‑1 (MQ=255) ttttGTGGATCTTCCCGCTGCTGGGATTCTTCTGCCCATGGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCATCATTGATGCAATTTGGCGTGATTTTCACGGCAGGCATCACGCTGTTCCCCTTTGTCATGCCGTCAAGCGTGAGTCCGATCTCCAGCCTGACGTtgtg < 1:195268/193‑1 (MQ=255) ggATCTTCCCGCTGCTGGGAGTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCNNCATTGANNc > 2:15875/1‑99 (MQ=255) gctgGGATTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGATTGGGGATTTTTGATGGCATCCTTGATGAAATTTGGCGTGCTTTTCACGGCAGGCATCACGCTGTTCCCCTTTGTTCTGCCGTCAAGCGTGAGTCCGATCTCCAGCCTGACGTTGTGGGACAGTCCTTCCAGTCa > 1:420127/1‑192 (MQ=255) gggATTCTTCTGCCCATTGCTTACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCATCATTGATGCAATTTGGCGTGATTTTCACGGCAGGCATCACGCTGTTCCCCTTTGTCATGCCg < 1:187819/136‑1 (MQ=255) gggATNCTTCTNCNNATTGCTTCCGGTGATGGCGNTTTATCGTGGTCGCCNGGGTNGTGGAnttntn > 2:187819/1‑66 (MQ=255) | ATGGCTTTGTACTGCTCGCCCAGGATGCTAACGGTCCTTCCAATCCGTTAATGAAACTGGTGGCAGTGCTACCTGGTGCCTGGATGAATAATTTTGTCGAGTCGCCCGTTTTGTGGATCTTCCCGCTGCTGGGATTCTTCTGCCCATTGCTGACGGTGATGGCGATTTATCGTGGTCGCCCGGGTTGGGGATTTTTGATGGCATCATTGATGCAATTTGGCGTGATTTTCACGGCAGGCATCACGCTGTTCCCCTTTGTCATGCCGTCAAGCGTGAGTCCGATCTCCAGCCTGACGTTGTGGGACAGTACTTCCAGTCAGCTGACGCTGAGCATTATGTTGGTAATCGTG > NC_000913/1039975‑1040324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |