| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 518,989 | C→T | R54H (CGC→CAC) | ybbO ← | NADP(+)‑dependent aldehyde reductase YbbO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 518,989 | 0 | C | T | 95.2% | 52.1 / ‑6.0 | 21 | R54H (CGC→CAC) | ybbO | NADP(+)‑dependent aldehyde reductase YbbO |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (8/12); total (8/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACATCGCGGGTAACAGGCGCATGGTGAGCTGGTGTGCGCCGAAAAAGTTGGCGGAAAACTGCTGTTCCATCTGCGCACGGCTGATGGTGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGCGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCGCTTTCCAGGCCAATTCCACTGGAACATCCGGTAATTAAGACCGATTTTTGCATAACTTTACCTGTCAGGATCTCCGTTGCTTTATGAGTCATGATTTACTAAAGGCTGCAACTGCTTCGCCATCCAGTCGGCAATAAACGGCTGGGCGTCGCGGTTGGGATGAATACCGTCATCCTG > NC_000913/518749‑519234 | aaCATCGCGGGTAACAGGCGCAGGGTGAGCTGTGGTGCGCCGAAAAAGTTGGCGGAAAACTGCTGTTCCATCTGCGCACGGCTGATGGTGGAAGGGGGGCCATACATGCCGAAGCCGGCATGGTTAAATATCCCATACAGACAATTATCGGTCATGGCGATCACCTCGTCGGCTGCTGTATCAACTCTTTCTGTTGAATCCAGATCGATAAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAAcatc < 1:421669/251‑1 (MQ=255) cgcATGGTGAGCTGGTGTGCGCCGAAAAAGTTGGCGGAAAACTGCTGTTCCATCTGCGCACGGCTGAGGGTGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCGCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAAcc < 1:169152/251‑1 (MQ=255) gggTGGGCGCCGAAAAAGTGGGAGGAAAACTGCTGTTCCATCTGTGCAGGGCGGATGGTGTAAAGGGGGCCATACATGCCGAAGCCGGCAGGGGTAAAGATCCCATAAAGACAATTAGCGGCCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTGTCGGGTGAAGCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTGCACGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATg < 1:107096/250‑1 (MQ=255) gtgCGCCGAAAAAGTTGGCGGAAAACTGCTGTTCCATCTGCGCACGGCTGATGGTGGACAGGGGGCCATACATGCAGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCCGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGaaa > 1:62510/1‑250 (MQ=255) tgCGCCGAAAAAGTTGGCGGAAAACTGCTGTTCCATCTGCGCACGGCTGATGGCGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAAc > 1:186105/1‑251 (MQ=255) ccGAAAAAGTTGGCGGAAAACTGCTGTTCCATCTGCGCACGGCTGATGGTGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGACGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTg > 1:10568/1‑251 (MQ=255) cGGAAAACTGCTGTTCCCTCTGCGCACGGCTGATGGTGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCg > 1:354145/1‑251 (MQ=255) ccATCTGCGCACGGCTGATGGTGGAAAGGGGCCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTGCTGGTGAATCCAGATCGATCAACACGCCGTTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTcn < 1:53325/236‑2 (MQ=255) cATCTGCGCACGGCGGATGGTGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTTTCGTTCAGGGCGATCACCTCGTCTGTTGCTCGATGAACACTTTCTGGTGAGGCCTGATCCAGTAACACGCGTGTTAATCCCTGGCTTTTCATGCTGTCGACAGCACCGGGTTTCCGGCAACCTGCCAGCATGTATAAACCCTTGCGTGTTAATTCGAGCGCGCTTTCCAGGc < 1:418463/251‑1 (MQ=255) gcgcACGGCGGATGGTGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTGGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCGCTTTCCAGGcc < 1:186348/247‑1 (MQ=255) ccATACATGCCGAATCCGGCATTGTTAACGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGCTCAACACTTTCTGGTGAATCCAGCTCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTACTTCGCGCGCGCTTTCCAGACCAATTCCACTGGAACATCCGGTAATTAAGAc > 1:163863/1‑251 (MQ=255) ccATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTTCGCGATCAACACGTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCGATTCTGTTCATGTGCTCATCATCATCCGGTTTcc < 1:374221/163‑1 (MQ=255) cATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCGCTTTCCAgg < 1:126981/185‑1 (MQ=255) aaGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAAGCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCGCTTTCCAGGCCAATTCCACTGGAACATCCGGTAATTAAGACCGATTTTTGCATAACTTTACCTGTCAGGATCTCCGttn < 1:279260/250‑2 (MQ=255) aCCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCACCACGCCGGTAAATCCCATGCTGTTCATGTGCTCACCATAATCCGGTTTCCGGCAACCTGCCAGAACATGAAAACCCTGGCGTTTTCATTCGAGCGCGATTTCCAGGCCAATTCCACTGGAACATCCGGTAATTAAGACCGATTTTTGCATAACTTTACCTGTCCGGATCTCCGTTGCTTTATGAGTCATGATTTACTaa > 1:284833/1‑249 (MQ=255) gCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTCAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCgg > 1:304378/1‑93 (MQ=255) gcgcGATCAACTCTTTCGGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGGTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCTCTTTCCAGGCCAATTCCACTGGAACATCCGGTAATTAAGACCGATTTTTGCATAACTTTAcc < 1:57708/197‑1 (MQ=255) aGATCGNNCAACACGACGGTAAATCCCATGCTGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGtttt < 2:10568/96‑1 (MQ=255) tGTTCATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCGCTTTCCAGGCCAATTCCACt < 2:266993/97‑1 (MQ=255) ngTTCATGTGCTCAACATCATCCGGGTTCCGGCAACCTGCCAGCACATGAAAAACCTGGCGTTTTAATTCGAGCGCGCTTTCCAGGCCAATTCCACt > 1:266993/2‑97 (MQ=255) cATGTGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCGCTTTCCAGGCCAATTCCACTGAAACATCCGGTAATTAAGACCGATTTTTGCATAACTTTACCTGTCAGGATCTCCGTTGCTTTATGAGTCATGATTTACTAAAGGCTGCAACTGCTTCGCCATCCAGTCGGCAATAAACGGCTGGGCGTCGCGGTTGGGATGAATACCGTCATCCTg < 1:197717/250‑1 (MQ=255) | AACATCGCGGGTAACAGGCGCATGGTGAGCTGGTGTGCGCCGAAAAAGTTGGCGGAAAACTGCTGTTCCATCTGCGCACGGCTGATGGTGGAAAGGGGGCCATACATGCCGAATCCGGCATTGTTAAAGATCCCATACAGACAATTATCGGTCAGGGCGATCACCTCGTCGGCTGCGCGATCAACACTTTCTGGTGAATCCAGATCGATCAACACGCCGGTAAATCCCATGCTGTTCATGCGCTCAACATCATCCGGTTTCCGGCAACCTGCCAGCACATGAAAACCCTGGCGTTTTAATTCGAGCGCGCTTTCCAGGCCAATTCCACTGGAACATCCGGTAATTAAGACCGATTTTTGCATAACTTTACCTGTCAGGATCTCCGTTGCTTTATGAGTCATGATTTACTAAAGGCTGCAACTGCTTCGCCATCCAGTCGGCAATAAACGGCTGGGCGTCGCGGTTGGGATGAATACCGTCATCCTG > NC_000913/518749‑519234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |